Variant report

Variant	rs4790958
Chromosome Location	chr17:63126269-63126270
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12453430	1.00[ASN][1000 genomes]
rs12603197	0.81[CEU][hapmap]
rs1530351	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs1533336	0.93[CEU][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs1867212	0.85[EUR][1000 genomes]
rs1867213	0.95[EUR][1000 genomes]
rs2007835	0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs2585859	0.86[EUR][1000 genomes]
rs299820	0.81[EUR][1000 genomes]
rs299821	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs299842	0.82[JPT][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs414341	0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs4791230	0.89[EUR][1000 genomes]
rs510199	0.92[EUR][1000 genomes]
rs8079386	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv527042	chr17:63123532-63128261	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63118800-63127000	Weak transcription	Spleen	Spleen
2	chr17:63119800-63133600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr17:63120200-63126400	Weak transcription	K562	blood
4	chr17:63124000-63132600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:63126200-63127000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
6	chr17:63126200-63127200	Enhancers	Primary hematopoietic stem cells	blood
7	chr17:63126200-63127600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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