Variant report

Variant	rs2588323
Chromosome Location	chr15:41842078-41842079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11858506	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1200353	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1473781	0.91[ASN][1000 genomes]
rs2012453	0.86[ASN][1000 genomes]
rs2297383	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2412619	0.96[ASN][1000 genomes]
rs2412620	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28477443	0.97[ASN][1000 genomes]
rs7163686	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9652441	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2588323	LTK	cis	lung	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41837200-41850000	Weak transcription	Brain Anterior Caudate	brain
2	chr15:41837200-41850200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:41837400-41847000	Weak transcription	Spleen	Spleen
4	chr15:41839600-41845800	Weak transcription	K562	blood
5	chr15:41839800-41845800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:41841000-41845800	Weak transcription	Hela-S3	cervix
7	chr15:41841800-41843000	Enhancers	HepG2	liver
8	chr15:41841800-41843600	Enhancers	Fetal Intestine Large	intestine
9	chr15:41841800-41843600	Enhancers	Fetal Intestine Small	intestine
10	chr15:41842000-41842200	Enhancers	Stomach Mucosa	stomach
11	chr15:41842000-41842800	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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