Variant report

Variant	rs28477443
Chromosome Location	chr15:41824412-41824413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41823818..41827123-chr15:41828175..41831276,4	K562	blood:

Variant related genes	Relation type
ENSG00000103932	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11858506	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1200352	0.88[EUR][1000 genomes]
rs1200353	0.95[ASN][1000 genomes]
rs12442382	0.88[EUR][1000 genomes]
rs1473781	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2012453	0.88[ASN][1000 genomes]
rs2297379	0.80[ASN][1000 genomes]
rs2297383	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412619	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2412620	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2588323	0.97[ASN][1000 genomes]
rs7163686	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7179280	0.85[EUR][1000 genomes]
rs9302110	0.87[EUR][1000 genomes]
rs9652441	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904112	chr15:41806658-41836234	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs28477443	TYRO3	cis	lung	GTEx
rs28477443	LTK	cis	lung	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41806400-41835200	Weak transcription	Right Atrium	heart
2	chr15:41806600-41824600	Weak transcription	Fetal Kidney	kidney
3	chr15:41806600-41835200	Weak transcription	Fetal Heart	heart
4	chr15:41807200-41835600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:41808000-41829600	Strong transcription	Fetal Stomach	stomach
6	chr15:41808600-41829200	Strong transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:41808600-41829600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:41808600-41835400	Weak transcription	Fetal Brain Male	brain
9	chr15:41808800-41829600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:41809000-41829400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:41809000-41829400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:41809600-41829200	Strong transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:41809600-41829400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:41811600-41829600	Strong transcription	Fetal Intestine Large	intestine
15	chr15:41811600-41829800	Strong transcription	Fetal Muscle Leg	muscle
16	chr15:41811800-41829400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:41811800-41829400	Strong transcription	Brain Hippocampus Middle	brain
18	chr15:41811800-41829400	Strong transcription	Stomach Smooth Muscle	stomach
19	chr15:41811800-41829600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:41811800-41829600	Strong transcription	Brain Anterior Caudate	brain
21	chr15:41812000-41829600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr15:41812200-41828800	Strong transcription	Brain Inferior Temporal Lobe	brain
23	chr15:41812200-41829200	Strong transcription	Duodenum Mucosa	Duodenum
24	chr15:41812200-41829600	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:41812200-41829600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:41812400-41829200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:41812400-41829400	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr15:41812400-41829400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:41812400-41829400	Strong transcription	Liver	Liver
30	chr15:41812400-41829400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:41812400-41829400	Strong transcription	Fetal Intestine Small	intestine
32	chr15:41812400-41829400	Strong transcription	Left Ventricle	heart
33	chr15:41812400-41829600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:41812600-41829400	Strong transcription	Brain Germinal Matrix	brain
35	chr15:41812600-41829400	Strong transcription	Pancreas	Pancrea
36	chr15:41812600-41829600	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr15:41812800-41828800	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr15:41813000-41829600	Strong transcription	Primary T cells from cord blood	blood
39	chr15:41814400-41829600	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr15:41815000-41829400	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr15:41815400-41829000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr15:41815600-41825400	Strong transcription	Rectal Smooth Muscle	rectum
43	chr15:41815800-41825600	Strong transcription	Colonic Mucosa	Colon
44	chr15:41815800-41829200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr15:41815800-41829400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr15:41816200-41829600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr15:41816400-41828800	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr15:41816400-41829600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr15:41816600-41828800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr15:41816600-41829600	Strong transcription	HUES64 Cell Line	embryonic stem cell

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