Variant report

Variant	rs2588509
Chromosome Location	chr12:62531990-62531991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11174354	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1146085	0.80[AFR][1000 genomes]
rs1146086	0.82[AFR][1000 genomes]
rs1146087	0.80[AFR][1000 genomes]
rs1146088	0.80[AFR][1000 genomes]
rs1245431	0.81[AFR][1000 genomes]
rs1245433	1.00[AMR][1000 genomes]
rs1245434	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1245444	0.83[AFR][1000 genomes]
rs1245445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1245446	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1663498	1.00[AMR][1000 genomes]
rs2464112	1.00[AMR][1000 genomes]
rs7975041	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62527000-62534000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:62530800-62533000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links