Variant report

Variant	rs7975041
Chromosome Location	chr12:62552174-62552175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11174354	1.00[AMR][1000 genomes]
rs1146085	0.84[YRI][hapmap]
rs1146086	0.83[YRI][hapmap]
rs1146088	0.83[YRI][hapmap]
rs1245361	0.83[YRI][hapmap]
rs1245431	0.98[AFR][1000 genomes]
rs1245433	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1245434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1245445	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1245446	0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1663498	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2464112	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2588509	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62550800-62552200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62551000-62554600	Enhancers	Primary T cells from cord blood	blood
3	chr12:62551200-62552200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr12:62551200-62553600	Enhancers	Primary hematopoietic stem cells	blood
5	chr12:62551400-62553200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr12:62551600-62554600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr12:62551800-62553000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr12:62552000-62552400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:62552000-62553200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:62552000-62553200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr12:62552000-62553400	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr12:62552000-62553600	Enhancers	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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