Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12537068	0.92[EUR][1000 genomes]
rs1406740	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2103343	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2590641	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2590644	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2590646	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2590647	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2590649	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2590654	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2590655	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2590656	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2590657	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2699728	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2699770	0.80[AMR][1000 genomes]
rs35444050	0.92[EUR][1000 genomes]
rs67563396	0.92[EUR][1000 genomes]
rs67841011	0.92[EUR][1000 genomes]
rs67927147	0.92[EUR][1000 genomes]
rs73217523	0.92[EUR][1000 genomes]
rs73217526	0.92[EUR][1000 genomes]
rs73217530	0.92[EUR][1000 genomes]
rs73217533	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889096	chr7:118438184-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1021902	chr7:118452600-118719244	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889097	chr7:118458421-118634585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118508400-118512800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:118508600-118510400	Enhancers	Dnd41	blood
3	chr7:118509200-118512600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:118509400-118510200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:118509400-118510600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:118509400-118512600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:118509400-118512800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:118509600-118512600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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