Variant report

Variant	rs2699770
Chromosome Location	chr7:118510783-118510784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:118503790..118506549-chr7:118510715..118512350,2	K562	blood:
2	chr7:118510382..118510908-chr7:118815972..118816682,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1357576	1.00[EUR][1000 genomes]
rs1406740	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1916717	1.00[EUR][1000 genomes]
rs1919915	1.00[EUR][1000 genomes]
rs1919919	1.00[EUR][1000 genomes]
rs2103343	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2204779	1.00[EUR][1000 genomes]
rs2222496	1.00[EUR][1000 genomes]
rs2246466	1.00[EUR][1000 genomes]
rs2256842	1.00[EUR][1000 genomes]
rs2263400	1.00[EUR][1000 genomes]
rs2440896	1.00[EUR][1000 genomes]
rs2590593	1.00[EUR][1000 genomes]
rs2590602	1.00[EUR][1000 genomes]
rs2590641	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2590644	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2590645	1.00[EUR][1000 genomes]
rs2590646	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2590649	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2590650	1.00[EUR][1000 genomes]
rs2590654	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2590655	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2590656	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2590657	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2590658	0.80[AMR][1000 genomes]
rs2689718	1.00[EUR][1000 genomes]
rs2699700	1.00[EUR][1000 genomes]
rs2699701	1.00[EUR][1000 genomes]
rs2699705	1.00[EUR][1000 genomes]
rs2699706	1.00[EUR][1000 genomes]
rs2699707	1.00[EUR][1000 genomes]
rs2699728	0.87[AMR][1000 genomes]
rs2699755	1.00[EUR][1000 genomes]
rs2699756	1.00[EUR][1000 genomes]
rs2699757	1.00[EUR][1000 genomes]
rs2699759	1.00[EUR][1000 genomes]
rs2699768	1.00[EUR][1000 genomes]
rs2699769	1.00[EUR][1000 genomes]
rs6974190	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889096	chr7:118438184-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1021902	chr7:118452600-118719244	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889097	chr7:118458421-118634585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118508400-118512800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:118509200-118512600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:118509400-118512600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:118509400-118512800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:118509600-118512600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:118510600-118510800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:118510600-118510800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:118510600-118512600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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