Variant report

Variant	rs2590650
Chromosome Location	chr7:118497820-118497821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1357576	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1916717	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1919915	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1919919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2204779	1.00[EUR][1000 genomes]
rs2222496	1.00[EUR][1000 genomes]
rs2246466	1.00[EUR][1000 genomes]
rs2256842	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2263400	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2440896	1.00[EUR][1000 genomes]
rs2590593	1.00[EUR][1000 genomes]
rs2590602	1.00[EUR][1000 genomes]
rs2590645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2689718	1.00[EUR][1000 genomes]
rs2699700	1.00[EUR][1000 genomes]
rs2699701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699707	1.00[EUR][1000 genomes]
rs2699749	0.90[AMR][1000 genomes]
rs2699755	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699766	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2699767	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2699768	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699769	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699770	1.00[EUR][1000 genomes]
rs6974190	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831109	chr7:118300593-118501778	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv889096	chr7:118438184-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1021902	chr7:118452600-118719244	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv889097	chr7:118458421-118634585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3402904	chr7:118497741-118500289	Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118495800-118498400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:118495800-118501000	Weak transcription	Fetal Lung	lung
3	chr7:118497000-118498600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:118497200-118498600	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links