Variant report

Variant	rs2699768
Chromosome Location	chr7:118510470-118510471
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:118510382..118510908-chr7:118815972..118816682,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1357576	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1916717	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1919915	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1919918	0.88[AFR][1000 genomes]
rs1919919	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2204779	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2222496	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2246466	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2256842	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2263400	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2440896	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2590593	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2590601	0.83[AFR][1000 genomes]
rs2590602	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2590620	0.88[AFR][1000 genomes]
rs2590642	0.88[AFR][1000 genomes]
rs2590643	0.88[AFR][1000 genomes]
rs2590645	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2590650	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2689718	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699700	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699701	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699705	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699706	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699707	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699754	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2699755	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699756	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699757	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699758	0.83[AFR][1000 genomes]
rs2699759	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2699760	0.83[AFR][1000 genomes]
rs2699769	1.00[EUR][1000 genomes]
rs2699770	1.00[EUR][1000 genomes]
rs6974190	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889093	chr7:117977091-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889096	chr7:118438184-118709754	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1021902	chr7:118452600-118719244	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889097	chr7:118458421-118634585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:118508400-118512800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:118509200-118512600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:118509400-118510600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:118509400-118512600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:118509400-118512800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:118509600-118512600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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