Variant report

Variant	rs2591017
Chromosome Location	chr8:69321635-69321636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10104993	0.87[ASN][1000 genomes]
rs12545860	0.93[ASN][1000 genomes]
rs13252745	0.80[ASN][1000 genomes]
rs1400552	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2249536	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2249556	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2591011	0.80[ASN][1000 genomes]
rs2591012	0.80[ASN][1000 genomes]
rs2591016	0.81[ASN][1000 genomes]
rs28377624	0.90[ASN][1000 genomes]
rs4346979	0.80[ASN][1000 genomes]
rs7009736	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7013706	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7832781	0.91[ASN][1000 genomes]
rs9298133	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv508512	chr8:69268794-69324532	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1023810	chr8:69308665-69440129	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv539644	chr8:69308665-69440129	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69317200-69342600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:69321000-69324000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:69321400-69322400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links