Variant report

Variant	rs2593300
Chromosome Location	chr15:76139534-76139535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76133681..76139746-chr15:76193985..76199740,23	MCF-7	breast:
2	chr15:76136933..76140770-chr15:76154598..76157335,3	K562	blood:
3	chr15:76137352..76139853-chr15:76196046..76197847,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167196	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2028950	0.91[AFR][1000 genomes]
rs2455900	0.91[AFR][1000 genomes]
rs2593276	1.00[AFR][1000 genomes]
rs2655138	0.91[AFR][1000 genomes]
rs335688	0.91[AFR][1000 genomes]
rs335699	0.88[AFR][1000 genomes]
rs335714	0.91[AFR][1000 genomes]
rs335723	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv974601	chr15:76139204-76160467	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76134800-76140400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr15:76137000-76139800	Transcr. at gene 5' and 3'	K562	blood
3	chr15:76137200-76140800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:76137200-76166200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:76137400-76140000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr15:76137600-76141400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr15:76137600-76141600	Enhancers	Fetal Heart	heart
8	chr15:76137600-76147000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr15:76137600-76147600	Weak transcription	Fetal Intestine Small	intestine
10	chr15:76137600-76155400	Weak transcription	Stomach Mucosa	stomach
11	chr15:76137600-76165000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:76137800-76140400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:76137800-76140400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr15:76137800-76143000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:76137800-76152400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr15:76137800-76165800	Weak transcription	Liver	Liver
17	chr15:76137800-76166000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:76137800-76188400	Weak transcription	Brain Anterior Caudate	brain
19	chr15:76138000-76139800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr15:76138000-76140000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr15:76138000-76140000	Enhancers	Fetal Brain Male	brain
22	chr15:76138000-76140000	Enhancers	HepG2	liver
23	chr15:76138000-76141200	Enhancers	Fetal Lung	lung
24	chr15:76138000-76141400	Enhancers	Primary T cells from cord blood	blood
25	chr15:76138000-76146000	Weak transcription	Right Ventricle	heart
26	chr15:76138000-76146800	Weak transcription	Osteobl	bone
27	chr15:76138000-76151000	Weak transcription	Primary B cells from cord blood	blood
28	chr15:76138000-76179600	Weak transcription	Small Intestine	intestine
29	chr15:76138200-76139600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:76138200-76139600	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr15:76138200-76139800	Enhancers	HMEC	breast
32	chr15:76138200-76140000	Enhancers	NHEK	skin
33	chr15:76138200-76140600	Weak transcription	Colonic Mucosa	Colon
34	chr15:76138200-76141000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr15:76138200-76141800	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr15:76138200-76141800	Weak transcription	Ovary	ovary
37	chr15:76138200-76142200	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr15:76138200-76142200	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr15:76138200-76143600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr15:76138200-76143600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr15:76138200-76145200	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr15:76138200-76146000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:76138200-76146000	Weak transcription	Lung	lung
44	chr15:76138200-76146800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:76138200-76147000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:76138200-76147400	Weak transcription	Brain Hippocampus Middle	brain
47	chr15:76138200-76148200	Weak transcription	Fetal Intestine Large	intestine
48	chr15:76138200-76150600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:76138200-76150800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:76138200-76153600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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