Variant report

Variant	rs335723
Chromosome Location	chr15:76231541-76231542
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76230095..76231887-chr15:76232023..76234158,2	K562	blood:
2	chr15:76225604..76228102-chr15:76229975..76232639,2	MCF-7	breast:
3	chr15:76231213..76235489-chr15:76235646..76238510,7	K562	blood:
4	chr15:76230088..76234622-chr15:76234992..76238934,7	K562	blood:

Variant related genes	Relation type
ENSG00000169752	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1394123	1.00[YRI][hapmap]
rs1503954	1.00[YRI][hapmap]
rs1617498	1.00[YRI][hapmap]
rs1874954	1.00[YRI][hapmap]
rs191394	1.00[YRI][hapmap]
rs2028950	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs2441930	0.82[YRI][hapmap]
rs2454469	1.00[YRI][hapmap]
rs2454471	1.00[YRI][hapmap]
rs2455900	0.96[AFR][1000 genomes]
rs2455901	1.00[YRI][hapmap]
rs2469043	1.00[YRI][hapmap]
rs2593276	0.88[AFR][1000 genomes]
rs2593300	0.88[AFR][1000 genomes]
rs2604409	1.00[YRI][hapmap]
rs2648436	1.00[YRI][hapmap]
rs2648438	1.00[YRI][hapmap]
rs2655138	0.96[AFR][1000 genomes]
rs335680	1.00[YRI][hapmap]
rs335686	1.00[YRI][hapmap]
rs335688	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs335691	1.00[YRI][hapmap]
rs335696	1.00[YRI][hapmap]
rs335699	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs335714	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs335718	0.89[AFR][1000 genomes]
rs335720	0.82[YRI][hapmap]
rs335727	1.00[YRI][hapmap]
rs41421144	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76198000-76231600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:76198200-76232200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:76207000-76232000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:76208400-76232800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:76211400-76240200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:76217200-76252000	Weak transcription	Pancreas	Pancrea
7	chr15:76217600-76231800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:76217600-76232600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:76219000-76232200	Weak transcription	Psoas Muscle	Psoas
10	chr15:76221200-76232200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:76222000-76231800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:76222000-76232200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:76222200-76231600	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr15:76222800-76233200	Strong transcription	NH-A	brain
15	chr15:76223600-76236200	Weak transcription	Fetal Heart	heart
16	chr15:76224800-76233000	Weak transcription	Fetal Intestine Small	intestine
17	chr15:76224800-76233400	Strong transcription	A549	lung
18	chr15:76225200-76232600	Weak transcription	Brain Hippocampus Middle	brain
19	chr15:76225800-76231800	Weak transcription	Brain Germinal Matrix	brain
20	chr15:76226400-76236600	Weak transcription	Stomach Mucosa	stomach
21	chr15:76226600-76238600	Weak transcription	NHLF	lung
22	chr15:76226800-76231600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr15:76226800-76231600	Weak transcription	Ovary	ovary
24	chr15:76226800-76231600	Weak transcription	Spleen	Spleen
25	chr15:76226800-76231800	Weak transcription	Fetal Stomach	stomach
26	chr15:76226800-76231800	Weak transcription	Lung	lung
27	chr15:76226800-76232000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:76226800-76232200	Weak transcription	Primary T cells from cord blood	blood
29	chr15:76226800-76232600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr15:76226800-76232800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:76226800-76233600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:76226800-76234600	Weak transcription	Adipose Nuclei	Adipose
33	chr15:76226800-76235000	Weak transcription	Fetal Kidney	kidney
34	chr15:76227000-76231600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr15:76227000-76231800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr15:76227000-76232600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr15:76227000-76233400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr15:76227000-76234000	Weak transcription	HepG2	liver
39	chr15:76227200-76232000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr15:76227600-76232000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr15:76227800-76231600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr15:76227800-76233000	Weak transcription	Fetal Muscle Trunk	muscle
43	chr15:76227800-76236000	Weak transcription	Osteobl	bone
44	chr15:76228000-76232200	Weak transcription	NHDF-Ad	bronchial
45	chr15:76228000-76232400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr15:76228000-76232400	Weak transcription	K562	blood
47	chr15:76228000-76233000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr15:76228000-76233200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr15:76228000-76234600	Weak transcription	Primary B cells from cord blood	blood
50	chr15:76228000-76235600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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