Variant report

Variant	rs1874954
Chromosome Location	chr15:76257661-76257662
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76253906..76256331-chr15:76257287..76259030,2	MCF-7	breast:
2	chr15:76256479..76258531-chr15:76292949..76295388,2	K562	blood:
3	chr15:76195434..76197797-chr15:76257193..76258703,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167196	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11631592	0.95[AFR][1000 genomes]
rs1394123	1.00[YRI][hapmap]
rs1503954	1.00[YRI][hapmap]
rs1617498	1.00[YRI][hapmap]
rs191394	1.00[YRI][hapmap]
rs2028950	1.00[YRI][hapmap]
rs2441930	0.82[YRI][hapmap]
rs2454469	1.00[YRI][hapmap]
rs2454471	1.00[YRI][hapmap]
rs2455901	1.00[YRI][hapmap]
rs2469042	1.00[AFR][1000 genomes]
rs2469043	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2604409	1.00[YRI][hapmap]
rs2648436	1.00[YRI][hapmap]
rs2648438	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs3110062	0.95[AFR][1000 genomes]
rs335680	1.00[YRI][hapmap]
rs335686	1.00[YRI][hapmap]
rs335688	1.00[YRI][hapmap]
rs335691	1.00[YRI][hapmap]
rs335696	1.00[YRI][hapmap]
rs335699	1.00[YRI][hapmap]
rs335714	1.00[YRI][hapmap]
rs335720	0.82[YRI][hapmap]
rs335723	1.00[YRI][hapmap]
rs335727	1.00[YRI][hapmap]
rs41421144	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1042140	chr15:76243040-76298555	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv542437	chr15:76243040-76298555	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76247800-76258000	Weak transcription	Hela-S3	cervix
2	chr15:76249800-76262800	Weak transcription	Gastric	stomach
3	chr15:76250800-76260200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:76257000-76258400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr15:76257000-76258800	Enhancers	Stomach Mucosa	stomach
6	chr15:76257200-76257800	Active TSS	Duodenum Mucosa	Duodenum
7	chr15:76257200-76257800	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr15:76257200-76257800	Active TSS	HepG2	liver
9	chr15:76257400-76262800	Weak transcription	Pancreas	Pancrea
10	chr15:76257600-76257800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr15:76257600-76257800	Flanking Active TSS	K562	blood
12	chr15:76257600-76258000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr15:76257600-76258000	Enhancers	HUES64 Cell Line	embryonic stem cell

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