Variant report

Variant	rs335680
Chromosome Location	chr15:76222835-76222836
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr15:76222348-76222882	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76218432..76221221-chr15:76222501..76224322,2	K562	blood:
2	chr15:76221926..76224490-chr15:76234036..76236027,2	K562	blood:

Variant related genes	Relation type
FBXO22	TF binding region
ENSG00000169752	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1394123	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs1394124	0.97[AFR][1000 genomes]
rs1503954	1.00[YRI][hapmap]
rs1617498	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1699278	0.97[AFR][1000 genomes]
rs1874954	1.00[YRI][hapmap]
rs191394	1.00[YRI][hapmap]
rs1964677	0.97[AFR][1000 genomes]
rs1968623	0.97[AFR][1000 genomes]
rs2028949	0.97[AFR][1000 genomes]
rs2028950	1.00[YRI][hapmap]
rs2047867	0.84[AFR][1000 genomes]
rs2454469	1.00[YRI][hapmap]
rs2454471	1.00[YRI][hapmap]
rs2455901	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2467289	1.00[YRI][hapmap]
rs2469043	1.00[YRI][hapmap]
rs2593274	0.90[AFR][1000 genomes]
rs2593279	0.85[AFR][1000 genomes]
rs2593301	0.90[AFR][1000 genomes]
rs2604409	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs2648436	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2648438	1.00[YRI][hapmap]
rs334938	1.00[YRI][hapmap]
rs334950	1.00[YRI][hapmap]
rs335686	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs335688	1.00[YRI][hapmap]
rs335691	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs335696	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs335699	1.00[YRI][hapmap]
rs335702	1.00[AFR][1000 genomes]
rs335703	0.94[AFR][1000 genomes]
rs335709	0.97[AFR][1000 genomes]
rs335712	0.97[AFR][1000 genomes]
rs335714	1.00[YRI][hapmap]
rs335723	1.00[YRI][hapmap]
rs335727	1.00[YRI][hapmap]
rs41421144	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76198000-76231600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:76198200-76232200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:76198400-76225000	Weak transcription	Fetal Kidney	kidney
4	chr15:76198600-76226400	Weak transcription	Fetal Brain Male	brain
5	chr15:76203800-76230200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:76207000-76226600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:76207000-76228200	Weak transcription	Brain Substantia Nigra	brain
8	chr15:76207000-76228200	Weak transcription	Colonic Mucosa	Colon
9	chr15:76207000-76232000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:76207200-76225000	Weak transcription	Spleen	Spleen
11	chr15:76207200-76226600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:76207400-76223000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:76208400-76232800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:76209000-76225000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:76209000-76225000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr15:76210800-76225000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:76211400-76240200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr15:76212400-76223400	Strong transcription	HepG2	liver
19	chr15:76213000-76224200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:76215000-76226600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:76215200-76223200	Weak transcription	Ovary	ovary
22	chr15:76215200-76225000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:76215200-76225000	Weak transcription	Colon Smooth Muscle	Colon
24	chr15:76215200-76225000	Weak transcription	Fetal Lung	lung
25	chr15:76215200-76225000	Weak transcription	NHDF-Ad	bronchial
26	chr15:76215200-76229200	Weak transcription	Esophagus	oesophagus
27	chr15:76215400-76227000	Weak transcription	Small Intestine	intestine
28	chr15:76215600-76224200	Weak transcription	Fetal Intestine Small	intestine
29	chr15:76217000-76223200	Weak transcription	Aorta	Aorta
30	chr15:76217000-76228400	Weak transcription	Gastric	stomach
31	chr15:76217200-76224200	Weak transcription	Fetal Stomach	stomach
32	chr15:76217200-76224800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:76217200-76225000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:76217200-76225000	Weak transcription	Lung	lung
35	chr15:76217200-76252000	Weak transcription	Pancreas	Pancrea
36	chr15:76217400-76228200	Weak transcription	Right Ventricle	heart
37	chr15:76217600-76224000	Strong transcription	HMEC	breast
38	chr15:76217600-76228200	Strong transcription	NHEK	skin
39	chr15:76217600-76231800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr15:76217600-76232600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr15:76217800-76225200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr15:76218200-76224800	Weak transcription	Left Ventricle	heart
43	chr15:76218200-76225000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr15:76218400-76224800	Weak transcription	HSMMtube	muscle
45	chr15:76218600-76225000	Weak transcription	Stomach Mucosa	stomach
46	chr15:76218600-76228600	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr15:76219000-76232200	Weak transcription	Psoas Muscle	Psoas
48	chr15:76219200-76224600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:76219400-76224200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr15:76219400-76226200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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