Variant report

Variant	rs335703
Chromosome Location	chr15:76203718-76203719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76197876..76200191-chr15:76201024..76203742,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1394123	0.91[AFR][1000 genomes]
rs1394124	0.91[AFR][1000 genomes]
rs1617498	0.94[AFR][1000 genomes]
rs1699278	0.91[AFR][1000 genomes]
rs1964677	0.91[AFR][1000 genomes]
rs1968623	0.91[AFR][1000 genomes]
rs2028949	0.91[AFR][1000 genomes]
rs2455901	0.82[AFR][1000 genomes]
rs2593274	0.85[AFR][1000 genomes]
rs2593301	0.85[AFR][1000 genomes]
rs2648436	0.91[AFR][1000 genomes]
rs335680	0.94[AFR][1000 genomes]
rs335686	0.91[AFR][1000 genomes]
rs335691	0.88[AFR][1000 genomes]
rs335696	0.94[AFR][1000 genomes]
rs335702	0.94[AFR][1000 genomes]
rs335709	0.91[AFR][1000 genomes]
rs335712	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76197000-76205800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:76197000-76206200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:76197000-76210800	Weak transcription	Aorta	Aorta
4	chr15:76197000-76214600	Weak transcription	Small Intestine	intestine
5	chr15:76197200-76205400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr15:76197200-76205400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr15:76197200-76205400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr15:76197200-76205400	Weak transcription	Brain Germinal Matrix	brain
9	chr15:76197200-76205400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:76197200-76205600	Weak transcription	Ovary	ovary
11	chr15:76197200-76206000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:76197200-76206000	Weak transcription	Brain Angular Gyrus	brain
13	chr15:76197200-76206200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:76197200-76206600	Weak transcription	Thymus	Thymus
15	chr15:76197200-76216800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:76197200-76216800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:76197600-76205600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr15:76197600-76206000	Weak transcription	Brain Substantia Nigra	brain
19	chr15:76197600-76210200	Weak transcription	Brain Hippocampus Middle	brain
20	chr15:76197800-76205600	Weak transcription	Brain Anterior Caudate	brain
21	chr15:76197800-76205600	Weak transcription	Spleen	Spleen
22	chr15:76197800-76205800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:76197800-76206600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr15:76197800-76206800	Weak transcription	Lung	lung
25	chr15:76197800-76214400	Weak transcription	Stomach Mucosa	stomach
26	chr15:76197800-76217400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr15:76198000-76205400	Weak transcription	Colon Smooth Muscle	Colon
28	chr15:76198000-76205600	Weak transcription	Colonic Mucosa	Colon
29	chr15:76198000-76205600	Weak transcription	HUVEC	blood vessel
30	chr15:76198000-76205800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr15:76198000-76206800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:76198000-76206800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:76198000-76214400	Weak transcription	Esophagus	oesophagus
34	chr15:76198000-76214400	Weak transcription	Pancreas	Pancrea
35	chr15:76198000-76214600	Weak transcription	Right Ventricle	heart
36	chr15:76198000-76231600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr15:76198200-76205400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr15:76198200-76206000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr15:76198200-76206000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr15:76198200-76208000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:76198200-76232200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr15:76198400-76208600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr15:76198400-76214200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:76198400-76225000	Weak transcription	Fetal Kidney	kidney
45	chr15:76198600-76206400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:76198600-76217000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr15:76198600-76226400	Weak transcription	Fetal Brain Male	brain
48	chr15:76198800-76205400	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr15:76198800-76205400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr15:76198800-76205400	Weak transcription	Rectal Mucosa Donor 29	rectum

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