Variant report

Variant	rs2593301
Chromosome Location	chr15:76141427-76141428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76140669..76144139-chr15:76145486..76148047,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1394123	0.93[AFR][1000 genomes]
rs1394124	0.93[AFR][1000 genomes]
rs1617498	0.90[AFR][1000 genomes]
rs1699278	0.93[AFR][1000 genomes]
rs1964677	0.93[AFR][1000 genomes]
rs1968623	0.93[AFR][1000 genomes]
rs2028949	0.93[AFR][1000 genomes]
rs2047867	0.80[AFR][1000 genomes]
rs2455901	0.84[AFR][1000 genomes]
rs2593274	1.00[AFR][1000 genomes]
rs2593279	0.94[AFR][1000 genomes]
rs2648436	0.88[AFR][1000 genomes]
rs335680	0.90[AFR][1000 genomes]
rs335686	0.93[AFR][1000 genomes]
rs335691	0.90[AFR][1000 genomes]
rs335696	0.90[AFR][1000 genomes]
rs335702	0.90[AFR][1000 genomes]
rs335703	0.85[AFR][1000 genomes]
rs335709	0.93[AFR][1000 genomes]
rs335712	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv974601	chr15:76139204-76160467	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76137200-76166200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr15:76137600-76141600	Enhancers	Fetal Heart	heart
3	chr15:76137600-76147000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:76137600-76147600	Weak transcription	Fetal Intestine Small	intestine
5	chr15:76137600-76155400	Weak transcription	Stomach Mucosa	stomach
6	chr15:76137600-76165000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:76137800-76143000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:76137800-76152400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:76137800-76165800	Weak transcription	Liver	Liver
10	chr15:76137800-76166000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:76137800-76188400	Weak transcription	Brain Anterior Caudate	brain
12	chr15:76138000-76146000	Weak transcription	Right Ventricle	heart
13	chr15:76138000-76146800	Weak transcription	Osteobl	bone
14	chr15:76138000-76151000	Weak transcription	Primary B cells from cord blood	blood
15	chr15:76138000-76179600	Weak transcription	Small Intestine	intestine
16	chr15:76138200-76141800	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr15:76138200-76141800	Weak transcription	Ovary	ovary
18	chr15:76138200-76142200	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr15:76138200-76142200	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr15:76138200-76143600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr15:76138200-76143600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr15:76138200-76145200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr15:76138200-76146000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:76138200-76146000	Weak transcription	Lung	lung
25	chr15:76138200-76146800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:76138200-76147000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:76138200-76147400	Weak transcription	Brain Hippocampus Middle	brain
28	chr15:76138200-76148200	Weak transcription	Fetal Intestine Large	intestine
29	chr15:76138200-76150600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr15:76138200-76150800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:76138200-76153600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr15:76138200-76154000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:76138200-76154200	Weak transcription	Gastric	stomach
34	chr15:76138200-76154200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:76138200-76154200	Weak transcription	Right Atrium	heart
36	chr15:76138200-76161800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr15:76138200-76166000	Weak transcription	Aorta	Aorta
38	chr15:76138200-76166000	Weak transcription	Colon Smooth Muscle	Colon
39	chr15:76138200-76166000	Weak transcription	Pancreas	Pancrea
40	chr15:76138200-76166000	Weak transcription	Spleen	Spleen
41	chr15:76138200-76183000	Weak transcription	Hela-S3	cervix
42	chr15:76138200-76195200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr15:76138200-76195400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr15:76138400-76145600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:76138400-76146000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:76138400-76146000	Weak transcription	A549	lung
47	chr15:76138400-76147400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:76138400-76153000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr15:76138400-76153000	Weak transcription	Thymus	Thymus
50	chr15:76138400-76155000	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links