Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1057511	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13388696	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13414988	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13428030	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2280404	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2593430	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2609911	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2681682	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2681683	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2681684	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34079417	0.87[ASN][1000 genomes]
rs6548029	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6711743	0.92[ASN][1000 genomes]
rs6735522	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6748488	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs751062	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9309682	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9309683	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9309684	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9309685	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9679326	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9679386	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv873770	chr2:30952987-30984850	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30940600-30969600	Weak transcription	Stomach Mucosa	stomach
2	chr2:30945800-30955400	Weak transcription	Fetal Intestine Small	intestine
3	chr2:30953600-30965200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr2:30954000-30955800	Strong transcription	Gastric	stomach
5	chr2:30954000-30965400	Weak transcription	Rectal Mucosa Donor 31	rectum

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