Variant report

Variant	rs259370
Chromosome Location	chr6:147136244-147136245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs194593	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2328770	0.81[CEU][hapmap]
rs259369	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs259371	0.85[CEU][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs259372	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259376	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs259378	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs259379	0.84[EUR][1000 genomes]
rs259385	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs259386	0.89[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.91[ASN][1000 genomes]
rs28516782	0.91[EUR][1000 genomes]
rs473225	0.89[EUR][1000 genomes]
rs473248	0.89[EUR][1000 genomes]
rs647298	0.91[EUR][1000 genomes]
rs6570778	0.81[CEU][hapmap]
rs674781	0.81[ASN][1000 genomes]
rs674792	0.81[ASN][1000 genomes]
rs6915391	0.80[CEU][hapmap]
rs6929209	0.81[CEU][hapmap]
rs9322079	0.89[CEU][hapmap];0.82[TSI][hapmap]
rs9377032	0.81[CEU][hapmap]
rs9390429	0.90[EUR][1000 genomes]
rs9399587	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv966634	chr6:147128760-147141217	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2518343	chr6:147129690-147138004	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3526991	chr6:147130896-147137152	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3526992	chr6:147130896-147137152	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3475079	chr6:147130951-147138090	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3475080	chr6:147130951-147138090	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3329784	chr6:147131018-147137998	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3326141	chr6:147131185-147138244	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3388911	chr6:147133427-147137859	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3445930	chr6:147134038-147138289	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3376466	chr6:147134213-147140733	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147129600-147136800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:147130800-147137400	Weak transcription	Placenta	Placenta
3	chr6:147134200-147140600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:147134200-147140600	Weak transcription	K562	blood
5	chr6:147136000-147141200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:147136200-147140400	Weak transcription	Osteobl	bone
7	chr6:147136200-147140600	Weak transcription	NH-A	brain

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