Variant report
Variant | rs259385 |
---|---|
Chromosome Location | chr6:147128331-147128332 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:147127210..147129501-chr6:147132757..147135712,3 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs194593 | 0.85[EUR][1000 genomes] |
rs2328770 | 0.81[CEU][hapmap] |
rs259369 | 0.86[EUR][1000 genomes] |
rs259370 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs259371 | 0.85[CEU][hapmap];0.82[CHB][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap] |
rs259372 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs259376 | 0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs259378 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs259379 | 0.87[EUR][1000 genomes] |
rs259386 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28516782 | 0.84[EUR][1000 genomes] |
rs473225 | 0.83[EUR][1000 genomes] |
rs473248 | 0.83[EUR][1000 genomes] |
rs647298 | 0.85[EUR][1000 genomes] |
rs6570778 | 0.81[CEU][hapmap] |
rs6915391 | 0.80[CEU][hapmap] |
rs6929209 | 0.81[CEU][hapmap] |
rs9322079 | 0.89[CEU][hapmap];0.82[TSI][hapmap] |
rs9377032 | 0.81[CEU][hapmap] |
rs9390429 | 0.83[EUR][1000 genomes] |
rs9399587 | 0.81[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv830838 | chr6:147090745-147274669 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:147125400-147133600 | Weak transcription | K562 | blood |