Variant report

Variant	rs2595251
Chromosome Location	chr3:159023992-159023993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1020470	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1077544	0.95[CHB][hapmap]
rs11921372	0.84[CEU][hapmap]
rs12487721	0.81[CEU][hapmap]
rs12495863	0.81[CEU][hapmap]
rs13314849	0.87[ASN][1000 genomes]
rs1449007	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1449008	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1449009	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs1449022	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1449026	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1449028	0.95[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs16830350	0.81[CEU][hapmap]
rs1900860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1967363	0.84[CEU][hapmap]
rs2004299	0.95[CHB][hapmap]
rs2044704	0.95[CHB][hapmap];0.96[JPT][hapmap];0.96[ASN][1000 genomes]
rs2122145	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2244434	0.87[ASN][1000 genomes]
rs2365835	0.81[CEU][hapmap]
rs2595233	0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2595235	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2595237	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2595240	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2595241	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2595249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2595261	0.95[CHB][hapmap]
rs2621281	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2621283	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2621285	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2621286	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2621293	0.95[CHB][hapmap];0.96[JPT][hapmap]
rs2621296	0.95[ASN][1000 genomes]
rs2621303	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2621304	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2621305	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2621307	0.96[ASN][1000 genomes]
rs2621308	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs2621309	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2922407	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs3903320	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4680509	0.81[CEU][hapmap]
rs6441260	0.81[CEU][hapmap]
rs7624604	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7629746	0.81[CEU][hapmap]
rs878382	0.81[CEU][hapmap]
rs895877	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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