Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:158837926..158840108-chr3:158976844..158979055,2	K562	blood:
2	chr3:158563458..158564296-chr3:158976821..158978499,10	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1020470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1077544	1.00[CHB][hapmap]
rs1449008	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1449009	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1449026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1449028	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1900860	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2004299	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs2044704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2595233	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2595237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2595240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2595241	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2595249	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2595251	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2595261	1.00[CHB][hapmap]
rs2621285	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2621286	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2621293	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2621303	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2621304	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2621306	0.88[YRI][hapmap]
rs2621308	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2922407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs3903320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7624604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3426016	chr3:158676623-158979242	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158972200-158977800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:158977000-158983000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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