Variant report

Variant	rs2596175
Chromosome Location	chr15:33779879-33779880
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33778958..33781584-chr15:33783377..33785698,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1435112	0.82[CEU][hapmap];0.81[CHB][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs1435113	0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs1435116	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1560964	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1996351	0.82[CHB][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2033610	0.82[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap]
rs2082752	0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2082753	0.82[CHB][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap]
rs2164249	0.82[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap]
rs2245508	0.85[GIH][hapmap];0.91[JPT][hapmap]
rs2572169	0.82[CHB][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2572170	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2572171	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2572173	0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2572174	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2572175	0.82[CHB][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2572177	0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2572178	0.80[ASN][1000 genomes]
rs2572179	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2572180	0.86[EUR][1000 genomes]
rs2572181	0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2572182	0.92[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2572183	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2572184	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2572186	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2572189	0.82[CHB][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap]
rs2596159	0.82[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap]
rs2596163	0.81[CEU][hapmap];0.82[CHB][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap]
rs2596164	0.82[CEU][hapmap];0.82[CHB][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap]
rs2596166	0.89[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs2596167	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2596168	0.83[EUR][1000 genomes]
rs2596169	0.82[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs2596170	0.81[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2596171	0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2596172	0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2596173	0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2596174	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2676014	0.82[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2676015	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2676016	0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2676087	0.82[CEU][hapmap];0.80[GIH][hapmap]
rs720337	0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33768000-33784800	Weak transcription	Brain Anterior Caudate	brain
2	chr15:33779000-33780200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:33779400-33780000	Enhancers	HMEC	breast
4	chr15:33779600-33780000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:33779600-33780600	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links