Variant report

Variant	rs2082753
Chromosome Location	chr15:33770121-33770122
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1435112	0.91[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1435113	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1435116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1560964	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap]
rs1560968	0.93[CEU][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap]
rs1996351	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs2033610	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs2082752	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2164249	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap]
rs2245508	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap]
rs2572169	0.83[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap]
rs2572173	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2572175	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs2572177	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2572181	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2572182	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2572186	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap]
rs2572189	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs2572192	0.89[CEU][hapmap]
rs2596159	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs2596163	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs2596164	0.82[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap]
rs2596166	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2596167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs2596169	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2596170	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2596171	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2596172	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2596173	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2596175	0.82[CHB][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap]
rs2596236	0.82[CEU][hapmap];0.82[MEX][hapmap]
rs2676014	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2676016	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2676017	0.92[CEU][hapmap];0.80[JPT][hapmap]
rs2676085	0.85[CEU][hapmap]
rs2676086	0.86[MEX][hapmap]
rs2676087	0.82[CEU][hapmap];0.84[GIH][hapmap];0.84[TSI][hapmap]
rs2676090	0.93[CEU][hapmap]
rs720337	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33756200-33777000	Weak transcription	Aorta	Aorta
2	chr15:33759800-33771600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:33768000-33771200	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:33768000-33774600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:33768000-33784800	Weak transcription	Brain Anterior Caudate	brain
6	chr15:33769400-33772200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:33769400-33772400	Weak transcription	Psoas Muscle	Psoas
8	chr15:33770000-33770600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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