Variant report

Variant	rs2596236
Chromosome Location	chr15:33732978-33732979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1155606	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs1435116	0.82[CEU][hapmap]
rs1465739	0.80[AMR][1000 genomes]
rs1560968	0.81[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.81[ASN][1000 genomes]
rs1878298	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1878299	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs2082753	0.82[CEU][hapmap];0.82[MEX][hapmap]
rs2245508	0.82[CEU][hapmap]
rs2339275	0.85[ASN][1000 genomes]
rs2459470	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs2572186	0.82[CEU][hapmap]
rs2572192	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs2572193	0.85[ASN][1000 genomes]
rs2596156	0.86[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs2596157	0.86[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs2596167	0.82[CEU][hapmap]
rs2596229	0.82[CEU][hapmap];0.85[GIH][hapmap]
rs2676017	0.85[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs2676025	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2676085	0.81[CHB][hapmap];0.83[CHD][hapmap]
rs2676086	0.86[CHB][hapmap];0.83[CHD][hapmap];0.82[ASN][1000 genomes]
rs2676087	0.86[CHB][hapmap];0.87[CHD][hapmap];0.85[ASN][1000 genomes]
rs2676088	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs2676089	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs2676090	0.86[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs7165065	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs8024555	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs930300	0.86[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv568919	chr15:33638335-33736683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33717200-33733200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:33732400-33738800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:33732600-33733200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:33732600-33733200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:33732600-33733400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr15:33732600-33734000	Enhancers	Primary hematopoietic stem cells	blood
7	chr15:33732600-33739600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:33732800-33746600	Weak transcription	Aorta	Aorta

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