Variant report

Variant	rs2459470
Chromosome Location	chr15:33753075-33753076
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33751077..33753937-chr15:33756239..33758312,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1155606	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1560968	0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1878298	0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1878299	0.86[CHB][hapmap];0.88[ASN][1000 genomes]
rs1996351	0.81[CEU][hapmap]
rs2033610	0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2082752	0.85[CEU][hapmap]
rs2164249	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2339275	0.91[ASN][1000 genomes]
rs2572173	0.82[CEU][hapmap]
rs2572175	0.81[CEU][hapmap]
rs2572177	0.82[CEU][hapmap]
rs2572189	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs2572192	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2572193	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596156	0.90[CHB][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2596157	0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2596159	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2596160	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2596162	0.83[AMR][1000 genomes]
rs2596163	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2596164	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2596165	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2596166	0.80[EUR][1000 genomes]
rs2596168	0.80[EUR][1000 genomes]
rs2596169	0.82[CEU][hapmap]
rs2596170	0.82[CEU][hapmap]
rs2596171	0.82[CEU][hapmap]
rs2596172	0.80[CEU][hapmap]
rs2596173	0.82[CEU][hapmap]
rs2596236	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs2676014	0.82[CEU][hapmap]
rs2676016	0.82[CEU][hapmap]
rs2676017	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2676085	0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs2676086	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676087	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676088	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676090	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2676094	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2676096	0.84[AMR][1000 genomes]
rs2676097	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7165065	0.86[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs720337	0.82[CEU][hapmap]
rs8024555	0.82[ASN][1000 genomes]
rs892781	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs892782	0.83[AMR][1000 genomes]
rs892783	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs930300	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33741600-33765400	Weak transcription	Fetal Muscle Leg	muscle
2	chr15:33750200-33753200	Enhancers	HMEC	breast
3	chr15:33750400-33753200	Enhancers	NHEK	skin
4	chr15:33750400-33754000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:33752000-33755000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:33752600-33753200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:33753000-33759400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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