Variant report

Variant	rs2676086
Chromosome Location	chr15:33747956-33747957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1155606	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1435112	0.82[MEX][hapmap]
rs1560968	0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1878298	0.83[ASW][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.85[ASN][1000 genomes]
rs1878299	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs1996351	0.82[GIH][hapmap]
rs2033610	0.89[CEU][hapmap];0.85[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2082752	0.81[CEU][hapmap]
rs2082753	0.86[MEX][hapmap]
rs2164249	0.89[CEU][hapmap];0.85[GIH][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2339275	0.87[ASN][1000 genomes]
rs2459470	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2572175	0.82[GIH][hapmap]
rs2572186	0.81[JPT][hapmap]
rs2572189	0.85[CEU][hapmap];0.91[GIH][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs2572192	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2572193	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2596156	0.83[ASW][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.87[ASN][1000 genomes]
rs2596157	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs2596159	0.89[CEU][hapmap];0.85[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2596160	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2596162	0.84[AMR][1000 genomes]
rs2596163	0.88[CEU][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2596164	0.89[CEU][hapmap];0.87[GIH][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2596165	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2596166	0.82[CEU][hapmap]
rs2596236	0.86[CHB][hapmap];0.83[CHD][hapmap];0.82[ASN][1000 genomes]
rs2676017	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2676085	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs2676087	0.83[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676089	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676090	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2676094	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2676096	0.85[AMR][1000 genomes]
rs2676097	0.90[EUR][1000 genomes]
rs7165065	0.86[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs892781	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs892782	0.84[AMR][1000 genomes]
rs892783	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs930300	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2337638	chr15:33747956-33747957	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33741600-33765400	Weak transcription	Fetal Muscle Leg	muscle
2	chr15:33742200-33748800	Weak transcription	Esophagus	oesophagus
3	chr15:33744400-33750400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:33744400-33750400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:33744600-33750400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:33745800-33748600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr15:33746200-33748400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:33747000-33748800	Weak transcription	Brain Anterior Caudate	brain
9	chr15:33747200-33748600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:33747600-33750400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:33747600-33752200	Weak transcription	Fetal Kidney	kidney

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