Variant report

Variant	rs2596484
Chromosome Location	chr6:31363840-31363841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:31363650-31364026	K562	blood:	n/a	chr6:31363893-31363909
2	E2F6	chr6:31363756-31364048	K562	blood:	n/a	n/a
3	ZMIZ1	chr6:31363704-31363885	K562	blood:	n/a	n/a
4	JUND	chr6:31363683-31363909	K562	blood:	n/a	n/a
5	GATA1	chr6:31363074-31364238	K562	blood:	n/a	chr6:31363809-31363818 chr6:31363809-31363819 chr6:31363811-31363818
6	MAX	chr6:31363663-31364048	K562	blood:	n/a	chr6:31363893-31363909
7	POLR2A	chr6:31363670-31363931	K562	blood:	n/a	n/a
8	MAX	chr6:31363626-31364078	K562	blood:	n/a	chr6:31363893-31363909
9	ZBTB7A	chr6:31363777-31363970	K562	blood:	n/a	n/a
10	MXI1	chr6:31363672-31363887	K562	blood:	n/a	n/a
11	REST	chr6:31363638-31364075	K562	blood:	n/a	n/a
12	MYC	chr6:31363662-31363932	K562	blood:	n/a	chr6:31363893-31363909
13	RCOR1	chr6:31363570-31363983	K562	blood:	n/a	n/a
14	TEAD4	chr6:31363522-31364008	K562	blood:	n/a	n/a
15	TEAD4	chr6:31363365-31363987	K562	blood:	n/a	n/a
16	MYC	chr6:31363657-31364018	K562	blood:	n/a	chr6:31363893-31363909
17	MAX	chr6:31363514-31364219	K562	blood:	n/a	chr6:31363893-31363909
18	TBL1XR1	chr6:31363798-31363848	K562	blood:	n/a	n/a
19	NR2F2	chr6:31363505-31363989	K562	blood:	n/a	chr6:31363732-31363747
20	MAZ	chr6:31363699-31363899	K562	blood:	n/a	n/a
21	ATF1	chr6:31363664-31363872	K562	blood:	n/a	n/a
22	E2F6	chr6:31363681-31364080	K562	blood:	n/a	n/a
23	EP300	chr6:31363631-31363985	K562	blood:	n/a	n/a
24	MYC	chr6:31363724-31363957	K562	blood:	n/a	chr6:31363893-31363909
25	E2F6	chr6:31363729-31363977	K562	blood:	n/a	n/a
26	CCNT2	chr6:31363683-31363925	K562	blood:	n/a	n/a
27	CBX3	chr6:31363551-31364030	K562	blood:	n/a	n/a
28	TAL1	chr6:31363613-31363982	K562	blood:	n/a	n/a
29	GATA2	chr6:31363535-31363978	K562	blood:	n/a	chr6:31363809-31363818 chr6:31363809-31363819 chr6:31363811-31363818
30	NR2F2	chr6:31363127-31364092	K562	blood:	n/a	chr6:31363732-31363747
31	TBL1XR1	chr6:31363674-31363873	K562	blood:	n/a	n/a
32	USF1	chr6:31363723-31364072	K562	blood:	n/a	chr6:31363900-31363913 chr6:31363902-31363911 chr6:31363902-31363911 chr6:31363896-31363917 chr6:31363901-31363910
33	RCOR1	chr6:31363628-31363902	K562	blood:	n/a	n/a
34	CEBPD	chr6:31363671-31364078	K562	blood:	n/a	n/a
35	POLR2A	chr6:31363660-31364013	K562	blood:	n/a	n/a
36	BHLHE40	chr6:31363629-31364109	K562	blood:	n/a	chr6:31363900-31363913 chr6:31363902-31363911 chr6:31363902-31363911 chr6:31363896-31363917 chr6:31363901-31363910
37	CTCF	chr6:31363780-31363930	HEK293	kidney:	n/a	n/a
38	GATA2	chr6:31363519-31364040	K562	blood:	n/a	chr6:31363809-31363818 chr6:31363809-31363819 chr6:31363811-31363818

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:31361896..31363850-chr6:31367811..31369632,2	K562	blood:

Variant related genes	Relation type
ENSG00000272221	TF binding region
HCP5	TF binding region
ENSG00000206337	Chromatin interaction

Extended variants
information (count: 300 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2254556	0.82[EUR][1000 genomes]
rs2442738	0.84[EUR][1000 genomes]
rs2507974	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2507977	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2507982	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2523455	0.90[AFR][1000 genomes]
rs2523486	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2523487	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2523488	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2523644	0.82[EUR][1000 genomes]
rs2596481	0.84[AFR][1000 genomes]
rs2596517	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3099849	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3130485	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3134787	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34053403	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3997982	0.83[EUR][1000 genomes]
rs3997993	0.84[EUR][1000 genomes]
rs4959017	0.84[EUR][1000 genomes]
rs4959018	0.84[EUR][1000 genomes]
rs9266596	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:279 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
4	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
6	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
7	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
8	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
9	nsv1029569	chr6:31104401-31412740	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
10	nsv538174	chr6:31104401-31412740	Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
11	nsv1015890	chr6:31131121-31449207	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
12	nsv538176	chr6:31131121-31449207	Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
13	nsv1015903	chr6:31162849-31412740	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
14	nsv538178	chr6:31162849-31412740	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
15	nsv1031682	chr6:31162849-31449207	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
16	nsv538179	chr6:31162849-31449207	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
17	esv3381377	chr6:31192213-31498578	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
18	esv3340592	chr6:31192248-31498535	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
19	nsv538180	chr6:31206639-31386279	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
20	nsv1029142	chr6:31206639-31449207	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
21	nsv1021052	chr6:31206639-31485736	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
22	nsv1029526	chr6:31256354-31449207	Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
23	nsv538181	chr6:31256354-31449207	Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
24	nsv1029508	chr6:31269776-31445712	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
25	nsv538182	chr6:31269776-31445712	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
26	esv1830805	chr6:31269777-31450100	Flanking Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
27	esv33563	chr6:31275505-31453668	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
28	nsv601570	chr6:31276751-31451476	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
29	nsv538184	chr6:31277798-31445712	Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
30	nsv1029678	chr6:31279535-31449207	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
31	nsv538185	chr6:31279535-31449207	Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
32	nsv1022451	chr6:31279535-31485736	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
33	nsv601608	chr6:31280101-31389784	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
34	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
35	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
36	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
37	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
38	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
39	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
40	nsv601660	chr6:31281770-31451476	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
41	nsv538186	chr6:31282952-31445712	Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
42	nsv869722	chr6:31287397-31461074	Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
43	nsv884319	chr6:31308988-31430721	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
44	esv3491002	chr6:31310527-31398831	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
45	esv3491003	chr6:31310527-31398831	Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
46	esv1828258	chr6:31316612-31456605	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
47	nsv538187	chr6:31325961-31445712	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
48	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
49	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
50	nsv1033646	chr6:31328826-31365869	Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2596484	CCHCR1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31345800-31367400	Weak transcription	Gastric	stomach
2	chr6:31348800-31364400	Weak transcription	Primary T cells from cord blood	blood
3	chr6:31350200-31367400	Weak transcription	Aorta	Aorta
4	chr6:31351000-31366000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:31351200-31364000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:31352000-31367400	Weak transcription	Pancreas	Pancrea
7	chr6:31353600-31366600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:31354200-31364600	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:31354400-31364400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:31354400-31364600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:31354800-31365000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:31354800-31366800	Weak transcription	HSMM	muscle
13	chr6:31355400-31364400	Weak transcription	HepG2	liver
14	chr6:31355800-31364800	Weak transcription	Liver	Liver
15	chr6:31356400-31364400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:31357200-31364000	Weak transcription	NHLF	lung
17	chr6:31359000-31364200	Weak transcription	GM12878-XiMat	blood
18	chr6:31359000-31364400	Weak transcription	NHEK	skin
19	chr6:31359000-31367000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:31359200-31364400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:31359200-31364600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr6:31359600-31364600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:31359600-31364600	Weak transcription	HMEC	breast
24	chr6:31360000-31364400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr6:31360000-31364600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr6:31360200-31364600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:31360200-31366600	Weak transcription	Primary B cells from cord blood	blood
28	chr6:31360200-31367400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:31360400-31364800	Weak transcription	Brain Angular Gyrus	brain
30	chr6:31360400-31367200	Weak transcription	Thymus	Thymus
31	chr6:31360800-31364200	Weak transcription	Fetal Thymus	thymus
32	chr6:31361000-31364400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:31361000-31367200	Weak transcription	Psoas Muscle	Psoas
34	chr6:31361200-31364600	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr6:31361400-31364000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr6:31361400-31364200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:31361400-31365000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:31361600-31364000	Strong transcription	Spleen	Spleen
39	chr6:31361600-31364200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:31361600-31364600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr6:31361800-31364200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:31361800-31367000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:31362000-31364000	Enhancers	Duodenum Mucosa	Duodenum
44	chr6:31362000-31364600	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr6:31362000-31365000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:31362000-31367000	Weak transcription	Colonic Mucosa	Colon
47	chr6:31362000-31367400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:31362200-31364200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:31362600-31365800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:31363000-31364400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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