Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11070707	1.00[JPT][hapmap]
rs12902107	1.00[JPT][hapmap]
rs1354919	1.00[JPT][hapmap]
rs1507619	0.92[AMR][1000 genomes]
rs1546424	1.00[JPT][hapmap]
rs1580996	1.00[JPT][hapmap]
rs1580997	1.00[JPT][hapmap]
rs2413963	1.00[JPT][hapmap]
rs4362337	1.00[JPT][hapmap]
rs4396481	1.00[JPT][hapmap]
rs4774539	1.00[JPT][hapmap]
rs598226	0.92[AMR][1000 genomes]
rs655163	0.92[AMR][1000 genomes]
rs692339	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs694722	0.92[AMR][1000 genomes]
rs7177601	1.00[MEX][hapmap]
rs73391063	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74014153	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8040436	1.00[JPT][hapmap]
rs967892	1.00[JPT][hapmap]
rs967893	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv569393	chr15:49977687-50012256	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49996200-50001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search: