Variant report

No.	Distal block	Cell Line	Cell type
1	chr15:50003699..50006468-chr15:50008293..50011048,2	MCF-7	breast:
2	chr15:50002798..50005216-chr15:50011124..50013123,2	MCF-7	breast:
3	chr15:50004344..50006410-chr15:50007705..50010279,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11070707	1.00[JPT][hapmap]
rs12902107	1.00[JPT][hapmap]
rs1354919	1.00[JPT][hapmap]
rs1507619	0.83[AMR][1000 genomes]
rs1546424	1.00[JPT][hapmap]
rs1580996	1.00[JPT][hapmap]
rs1580997	1.00[JPT][hapmap]
rs2413963	1.00[JPT][hapmap]
rs2601021	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4396481	1.00[JPT][hapmap]
rs4774539	1.00[JPT][hapmap]
rs598226	0.83[AMR][1000 genomes]
rs655163	0.83[AMR][1000 genomes]
rs691723	0.81[AFR][1000 genomes]
rs694722	0.83[AMR][1000 genomes]
rs7177601	1.00[MEX][hapmap]
rs73391063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74014153	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8040436	1.00[JPT][hapmap]
rs967892	1.00[JPT][hapmap]
rs967893	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv569393	chr15:49977687-50012256	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50003800-50010400	Weak transcription	Aorta	Aorta
2	chr15:50004200-50004800	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr15:50004200-50004800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr15:50004200-50005000	Enhancers	Brain Cingulate Gyrus	brain
5	chr15:50004400-50011600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr15:50004400-50014200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr15:50004600-50005200	Enhancers	Brain Hippocampus Middle	brain

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