Variant report

Variant	rs2602533
Chromosome Location	chr2:178167965-178167966
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178159535..178161054-chr2:178165959..178168725,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11679800	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11688684	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs12474344	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12990594	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.98[TSI][hapmap]
rs13022567	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1901827	0.90[ASN][1000 genomes]
rs2364732	0.94[EUR][1000 genomes]
rs56117787	0.86[ASN][1000 genomes]
rs58723250	0.86[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2602533	AGPS	cis	lymphoblastoid	seeQTL
rs2602533	OLA1	cis	parietal	SCAN
rs2602533	LOC100130691	cis	brain	BrainEAC

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178146600-178180400	Weak transcription	Esophagus	oesophagus
2	chr2:178147800-178187000	Weak transcription	HSMM	muscle
3	chr2:178147800-178190800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:178151400-178179400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:178152000-178171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:178152800-178178200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:178155600-178174000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr2:178155800-178185200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr2:178156400-178172000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr2:178157800-178171600	Weak transcription	Primary T cells from cord blood	blood
11	chr2:178160400-178187200	Weak transcription	Brain Angular Gyrus	brain
12	chr2:178160800-178186000	Weak transcription	Adipose Nuclei	Adipose
13	chr2:178160800-178196200	Weak transcription	Ovary	ovary
14	chr2:178161200-178171200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:178163400-178168200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:178163400-178171400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:178163600-178177800	Weak transcription	HepG2	liver
18	chr2:178163600-178178200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:178165000-178174000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr2:178165200-178173800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr2:178165800-178187200	Weak transcription	Spleen	Spleen
22	chr2:178166600-178187000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr2:178166800-178169000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr2:178167600-178174000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr2:178167600-178174000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr2:178167600-178187000	Weak transcription	Left Ventricle	heart
27	chr2:178167800-178174000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr2:178167800-178175800	Weak transcription	Primary B cells from cord blood	blood

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