Variant report

Variant	rs13022567
Chromosome Location	chr2:178165584-178165585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178162817..178164821-chr2:178165329..178167343,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10170546	0.81[JPT][hapmap]
rs11679800	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11688684	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs12469386	0.80[JPT][hapmap]
rs12474344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12476383	0.84[EUR][1000 genomes]
rs12618139	0.80[JPT][hapmap]
rs12990594	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs13000048	0.82[JPT][hapmap]
rs13025552	0.85[EUR][1000 genomes]
rs1348848	0.80[JPT][hapmap]
rs1348849	0.81[JPT][hapmap]
rs1374437	0.80[JPT][hapmap]
rs1453370	0.81[JPT][hapmap]
rs1901825	0.81[JPT][hapmap]
rs2060929	0.80[JPT][hapmap]
rs2069043	0.83[EUR][1000 genomes]
rs2084233	0.85[JPT][hapmap]
rs2121430	0.80[JPT][hapmap]
rs2364732	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2602533	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3813259	0.80[JPT][hapmap]
rs4243388	0.81[JPT][hapmap]
rs4893821	0.80[JPT][hapmap]
rs4893825	0.80[JPT][hapmap]
rs4893936	0.81[JPT][hapmap]
rs6742951	0.81[JPT][hapmap]
rs7587604	0.81[JPT][hapmap]
rs7591807	0.80[JPT][hapmap]
rs952746	0.81[JPT][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178146600-178180400	Weak transcription	Esophagus	oesophagus
2	chr2:178147800-178187000	Weak transcription	HSMM	muscle
3	chr2:178147800-178190800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:178151400-178167200	Weak transcription	Left Ventricle	heart
5	chr2:178151400-178179400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr2:178152000-178171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:178152800-178178200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr2:178155600-178174000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:178155800-178166600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:178155800-178167000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:178155800-178167400	Weak transcription	Primary B cells from cord blood	blood
12	chr2:178155800-178185200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr2:178156400-178172000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr2:178157800-178171600	Weak transcription	Primary T cells from cord blood	blood
15	chr2:178160400-178187200	Weak transcription	Brain Angular Gyrus	brain
16	chr2:178160600-178166800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr2:178160800-178186000	Weak transcription	Adipose Nuclei	Adipose
18	chr2:178160800-178196200	Weak transcription	Ovary	ovary
19	chr2:178161200-178171200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:178161400-178165800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr2:178163400-178168200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr2:178163400-178171400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:178163600-178177800	Weak transcription	HepG2	liver
24	chr2:178163600-178178200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:178164200-178166800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr2:178165000-178174000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr2:178165200-178173800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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