Variant report

Variant	rs10170546
Chromosome Location	chr2:178248790-178248791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:178221876..178224695-chr2:178247064..178249757,2	K562	blood:
2	chr2:178248182..178250314-chr2:178256371..178259150,2	MCF-7	breast:
3	chr2:178244319..178246980-chr2:178248499..178250023,2	K562	blood:

Variant related genes	Relation type
ENSG00000018510	Chromatin interaction
ENSG00000116044	Chromatin interaction
ENSG00000213963	Chromatin interaction

Extended variants
information (count: 121 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10165785	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10170667	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10171135	0.90[YRI][hapmap]
rs10176632	0.86[ASN][1000 genomes]
rs10194648	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10201153	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs10208150	0.87[ASN][1000 genomes]
rs10497502	0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10497503	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10497508	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10803909	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10930792	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11688684	0.86[JPT][hapmap]
rs11889272	0.90[YRI][hapmap]
rs11893448	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12104588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12469386	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12474344	0.81[JPT][hapmap]
rs12615367	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs12616093	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs12616443	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12618139	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12620035	0.82[ASN][1000 genomes]
rs12693120	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12990594	0.85[JPT][hapmap]
rs12990729	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12996447	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13000048	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13004955	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13022567	0.81[JPT][hapmap]
rs13027959	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1348848	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1348849	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1348850	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1374437	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1453370	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1453371	0.86[ASN][1000 genomes]
rs1453373	0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs16865203	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs16865216	0.85[ASN][1000 genomes]
rs16865229	0.85[ASN][1000 genomes]
rs16865291	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs16865328	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs16865331	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1901824	0.93[ASN][1000 genomes]
rs1901825	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1901826	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes]
rs1901829	0.95[ASN][1000 genomes]
rs1979058	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2034678	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2060929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2084233	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2121430	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2166558	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2197611	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2364845	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2364854	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3213945	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs3769995	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs3769996	0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs3769997	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs3770002	0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs3813259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3902850	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4243388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4341974	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4893821	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4893822	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4893823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4893824	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4893825	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4893931	0.88[ASN][1000 genomes]
rs4893932	0.93[ASN][1000 genomes]
rs4893934	0.93[ASN][1000 genomes]
rs4893935	0.81[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs4893936	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4893938	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4893941	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4893944	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4893945	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4893946	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4893950	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4893951	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4893954	0.86[ASN][1000 genomes]
rs4893957	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4893959	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4893961	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs4893962	0.90[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs56942680	0.89[ASN][1000 genomes]
rs57273542	0.84[ASN][1000 genomes]
rs57295810	0.81[ASN][1000 genomes]
rs57527255	0.83[ASN][1000 genomes]
rs57541536	0.83[ASN][1000 genomes]
rs57733896	0.81[ASN][1000 genomes]
rs57948641	0.83[ASN][1000 genomes]
rs58297927	0.83[ASN][1000 genomes]
rs58483300	0.89[ASN][1000 genomes]
rs59111239	0.85[ASN][1000 genomes]
rs59208652	0.83[ASN][1000 genomes]
rs59504156	0.82[ASN][1000 genomes]
rs59751564	0.82[ASN][1000 genomes]
rs60670838	0.84[ASN][1000 genomes]
rs60733259	0.89[ASN][1000 genomes]
rs6433670	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6433673	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6710575	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6737342	0.93[YRI][hapmap]
rs6742951	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6752528	0.93[YRI][hapmap]
rs7565022	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7573763	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7586051	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7587604	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7591807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7604673	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7606235	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7607450	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8941	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs952746	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9679607	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9789582	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10170546	DKFZp451M2119	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178218000-178256200	Weak transcription	HepG2	liver
2	chr2:178235400-178256600	Weak transcription	Primary T cells from cord blood	blood
3	chr2:178239600-178254800	Weak transcription	A549	lung
4	chr2:178243000-178250000	Weak transcription	Psoas Muscle	Psoas
5	chr2:178243000-178256200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:178243000-178256400	Weak transcription	Fetal Intestine Small	intestine
7	chr2:178243200-178256400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr2:178243200-178256600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:178243200-178256600	Weak transcription	NHEK	skin
10	chr2:178243200-178257000	Weak transcription	Fetal Thymus	thymus
11	chr2:178243400-178248800	Weak transcription	Liver	Liver
12	chr2:178243400-178256400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr2:178243400-178256600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr2:178243400-178256600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr2:178243600-178256600	Weak transcription	NHDF-Ad	bronchial
16	chr2:178243800-178256600	Weak transcription	Fetal Muscle Leg	muscle
17	chr2:178244800-178256400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr2:178245200-178256400	Weak transcription	Adipose Nuclei	Adipose
19	chr2:178245200-178256400	Weak transcription	Brain Hippocampus Middle	brain
20	chr2:178245200-178256400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr2:178245200-178256400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr2:178245400-178255000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:178245600-178248800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr2:178245600-178254800	Weak transcription	HSMM	muscle
25	chr2:178245600-178256600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:178245800-178248800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr2:178245800-178248800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr2:178245800-178252600	Weak transcription	Dnd41	blood
29	chr2:178245800-178254800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr2:178245800-178256600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:178245800-178257000	Weak transcription	Left Ventricle	heart
32	chr2:178246000-178250400	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr2:178246000-178254800	Weak transcription	K562	blood
34	chr2:178246200-178256400	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr2:178248600-178249000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr2:178248600-178249000	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr2:178248600-178249000	Enhancers	Primary hematopoietic stem cells	blood
38	chr2:178248600-178249000	Enhancers	GM12878-XiMat	blood
39	chr2:178248600-178249400	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr2:178248600-178249400	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr2:178248600-178249400	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr2:178248600-178249400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr2:178248600-178249600	Enhancers	HUES6 Cell Line	embryonic stem cell

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