Variant report

Variant	rs59751564
Chromosome Location	chr2:178233842-178233843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10170546	0.82[ASN][1000 genomes]
rs10176632	0.95[ASN][1000 genomes]
rs10497502	0.83[ASN][1000 genomes]
rs10497508	0.87[ASN][1000 genomes]
rs12104588	0.82[ASN][1000 genomes]
rs12611938	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12614820	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12618139	0.84[ASN][1000 genomes]
rs12620035	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1453371	0.95[ASN][1000 genomes]
rs16865203	0.87[ASN][1000 genomes]
rs16865216	0.87[ASN][1000 genomes]
rs16865229	0.87[ASN][1000 genomes]
rs16865291	0.84[ASN][1000 genomes]
rs1901824	0.88[ASN][1000 genomes]
rs1901825	0.88[ASN][1000 genomes]
rs1901826	0.95[ASN][1000 genomes]
rs1901829	0.86[ASN][1000 genomes]
rs2034678	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2364845	0.88[ASN][1000 genomes]
rs2364853	0.81[ASN][1000 genomes]
rs3769995	0.84[ASN][1000 genomes]
rs3769996	0.84[ASN][1000 genomes]
rs3769997	0.84[ASN][1000 genomes]
rs3770002	0.85[ASN][1000 genomes]
rs3813259	0.82[ASN][1000 genomes]
rs4893821	0.88[ASN][1000 genomes]
rs4893822	0.84[ASN][1000 genomes]
rs4893931	0.83[ASN][1000 genomes]
rs4893932	0.87[ASN][1000 genomes]
rs4893934	0.85[ASN][1000 genomes]
rs4893935	0.83[ASN][1000 genomes]
rs4893936	0.86[ASN][1000 genomes]
rs4893938	0.82[ASN][1000 genomes]
rs4893951	0.83[ASN][1000 genomes]
rs56942680	0.92[ASN][1000 genomes]
rs57273542	0.88[ASN][1000 genomes]
rs57295810	0.84[ASN][1000 genomes]
rs57527255	0.85[ASN][1000 genomes]
rs57541536	0.85[ASN][1000 genomes]
rs57733896	0.83[ASN][1000 genomes]
rs57948641	0.85[ASN][1000 genomes]
rs58297927	0.85[ASN][1000 genomes]
rs58483300	0.92[ASN][1000 genomes]
rs59111239	0.87[ASN][1000 genomes]
rs59208652	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59421055	0.81[ASN][1000 genomes]
rs59504156	0.84[ASN][1000 genomes]
rs59578457	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60642012	0.81[ASN][1000 genomes]
rs60670838	0.87[ASN][1000 genomes]
rs60733259	0.92[ASN][1000 genomes]
rs7573763	0.82[ASN][1000 genomes]
rs7591807	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3051	chr2:178193436-178239394	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178203400-178244400	Weak transcription	HSMM	muscle
2	chr2:178218000-178256200	Weak transcription	HepG2	liver
3	chr2:178221600-178240600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:178232800-178244400	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links