Variant report

Variant	rs1901829
Chromosome Location	chr2:178237922-178237923
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10165785	0.88[ASN][1000 genomes]
rs10170546	0.95[ASN][1000 genomes]
rs10170667	0.83[ASN][1000 genomes]
rs10176632	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10194648	0.83[ASN][1000 genomes]
rs10208150	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10497503	0.83[ASN][1000 genomes]
rs10497508	0.80[ASN][1000 genomes]
rs10803909	0.82[ASN][1000 genomes]
rs10930792	0.85[ASN][1000 genomes]
rs11893448	0.90[ASN][1000 genomes]
rs12104588	0.95[ASN][1000 genomes]
rs12469386	0.81[ASN][1000 genomes]
rs12611938	0.84[ASN][1000 genomes]
rs12614820	0.84[ASN][1000 genomes]
rs12616443	0.84[ASN][1000 genomes]
rs12620035	0.87[ASN][1000 genomes]
rs12693120	0.90[ASN][1000 genomes]
rs12990729	0.85[ASN][1000 genomes]
rs12996447	0.87[ASN][1000 genomes]
rs13000048	0.81[ASN][1000 genomes]
rs13027959	0.87[ASN][1000 genomes]
rs1348848	0.83[ASN][1000 genomes]
rs1348849	0.83[ASN][1000 genomes]
rs1374437	0.83[ASN][1000 genomes]
rs1453370	0.85[ASN][1000 genomes]
rs1453371	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1453373	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16865203	0.80[ASN][1000 genomes]
rs16865216	0.80[ASN][1000 genomes]
rs16865229	0.80[ASN][1000 genomes]
rs1901824	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1901825	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1901826	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1979058	0.85[ASN][1000 genomes]
rs2034678	0.84[ASN][1000 genomes]
rs2060929	0.90[ASN][1000 genomes]
rs2084233	0.83[ASN][1000 genomes]
rs2121430	0.84[ASN][1000 genomes]
rs2166558	0.82[ASN][1000 genomes]
rs2197611	0.83[ASN][1000 genomes]
rs2364845	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2364854	0.81[ASN][1000 genomes]
rs3813259	0.95[ASN][1000 genomes]
rs3902850	0.86[ASN][1000 genomes]
rs4243388	0.90[ASN][1000 genomes]
rs4341974	0.82[ASN][1000 genomes]
rs4893821	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4893822	0.83[ASN][1000 genomes]
rs4893823	0.88[ASN][1000 genomes]
rs4893824	0.88[ASN][1000 genomes]
rs4893825	0.88[ASN][1000 genomes]
rs4893931	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4893932	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4893934	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4893935	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4893936	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4893938	0.95[ASN][1000 genomes]
rs4893941	0.90[ASN][1000 genomes]
rs4893944	0.86[ASN][1000 genomes]
rs4893945	0.88[ASN][1000 genomes]
rs4893946	0.84[ASN][1000 genomes]
rs4893950	0.85[ASN][1000 genomes]
rs4893951	0.81[ASN][1000 genomes]
rs4893954	0.81[ASN][1000 genomes]
rs4893957	0.83[ASN][1000 genomes]
rs56942680	0.84[ASN][1000 genomes]
rs57273542	0.81[ASN][1000 genomes]
rs58483300	0.84[ASN][1000 genomes]
rs59111239	0.80[ASN][1000 genomes]
rs59208652	0.88[ASN][1000 genomes]
rs59578457	0.84[ASN][1000 genomes]
rs59751564	0.86[ASN][1000 genomes]
rs60670838	0.80[ASN][1000 genomes]
rs60733259	0.84[ASN][1000 genomes]
rs6433670	0.83[ASN][1000 genomes]
rs6433673	0.81[ASN][1000 genomes]
rs6710575	0.81[ASN][1000 genomes]
rs6742951	0.83[ASN][1000 genomes]
rs7565022	0.84[ASN][1000 genomes]
rs7573763	0.95[ASN][1000 genomes]
rs7586051	0.90[ASN][1000 genomes]
rs7587604	0.84[ASN][1000 genomes]
rs7591807	0.95[ASN][1000 genomes]
rs7607450	0.83[ASN][1000 genomes]
rs952746	0.84[ASN][1000 genomes]
rs9679607	0.86[ASN][1000 genomes]
rs9789582	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3051	chr2:178193436-178239394	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178203400-178244400	Weak transcription	HSMM	muscle
2	chr2:178218000-178256200	Weak transcription	HepG2	liver
3	chr2:178221600-178240600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:178232800-178244400	Weak transcription	Dnd41	blood
5	chr2:178235400-178256600	Weak transcription	Primary T cells from cord blood	blood
6	chr2:178235800-178244600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr2:178237400-178244400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:178237400-178244400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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