The 2.0 version of rSNPBase

Variant report

Variant rs60733259
Chromosome Location chr2:178259550-178259551
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178256600-178259800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
2 chr2:178256600-178260200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr2:178256800-178259600 Active TSS HSMMtube muscle
4 chr2:178256800-178259800 Flanking Active TSS Primary hematopoietic stem cells blood
5 chr2:178256800-178261200 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr2:178257000-178260000 Active TSS Fetal Kidney kidney
7 chr2:178257800-178259800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr2:178258000-178261800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr2:178258200-178259600 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
10 chr2:178258200-178259600 Flanking Active TSS Liver Liver
11 chr2:178258200-178259600 Flanking Active TSS HUVEC blood vessel
12 chr2:178258200-178260600 Flanking Active TSS Dnd41 blood
13 chr2:178258400-178259600 Enhancers Primary B cells from peripheral blood blood
14 chr2:178258400-178259600 Flanking Active TSS Duodenum Mucosa Duodenum
15 chr2:178258400-178259600 Flanking Active TSS Rectal Mucosa Donor 29 rectum
16 chr2:178258400-178259800 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
17 chr2:178258400-178260200 Enhancers Primary T killer naive cells fromperipheralblood blood
18 chr2:178258400-178260200 Enhancers Primary T killer memory cells from peripheral blood blood
19 chr2:178258400-178261000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr2:178258400-178261000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr2:178258400-178261200 Weak transcription Esophagus oesophagus
22 chr2:178258400-178261200 Weak transcription Gastric stomach
23 chr2:178258400-178261600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr2:178258400-178261600 Weak transcription Placenta Placenta
25 chr2:178258400-178261800 Weak transcription Fetal Muscle Trunk muscle
26 chr2:178258400-178261800 Weak transcription Left Ventricle heart
27 chr2:178258400-178262400 Weak transcription Pancreas Pancrea
28 chr2:178258400-178262400 Weak transcription Small Intestine intestine
29 chr2:178258400-178262800 Enhancers Primary T helper 17 cells PMA-I stimulated --
30 chr2:178258400-178263000 Enhancers Sigmoid Colon Sigmoid Colon
31 chr2:178258400-178263200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr2:178258400-178264400 Enhancers Primary monocytes fromperipheralblood blood
33 chr2:178258400-178264400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
34 chr2:178258400-178272600 Weak transcription Primary T cells fromperipheralblood blood
35 chr2:178258600-178259600 Flanking Active TSS A549 lung
36 chr2:178258600-178260200 Enhancers Breast Myoepithelial Primary Cells Breast
37 chr2:178258600-178260200 Enhancers Primary T helper naive cells fromperipheralblood blood
38 chr2:178258600-178260200 Enhancers Primary T helper cells fromperipheralblood blood
39 chr2:178258600-178260400 Enhancers Primary mononuclear cells fromperipheralblood Blood
40 chr2:178258600-178260600 Weak transcription ES-WA7 Cell Line embryonic stem cell
41 chr2:178258600-178261200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr2:178258600-178261200 Weak transcription Colonic Mucosa Colon
43 chr2:178258600-178261200 Weak transcription NHLF lung
44 chr2:178258600-178262400 Weak transcription Fetal Thymus thymus
45 chr2:178258600-178262600 Weak transcription Ovary ovary
46 chr2:178258600-178264000 Weak transcription Fetal Muscle Leg muscle
47 chr2:178258600-178264200 Weak transcription Right Atrium heart
48 chr2:178258800-178259600 Enhancers Brain Anterior Caudate brain
49 chr2:178258800-178259600 Enhancers Fetal Intestine Small intestine
50 chr2:178258800-178259800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin

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Last update: Aug 31, 2015