The 2.0 version of rSNPBase

Variant report

Variant rs57273542
Chromosome Location chr2:178291641-178291642
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178258800-178294200 Weak transcription Thymus Thymus
2 chr2:178263400-178291800 Weak transcription Duodenum Mucosa Duodenum
3 chr2:178270400-178294400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr2:178272800-178295200 Weak transcription Left Ventricle heart
5 chr2:178274600-178291800 Weak transcription Primary B cells from cord blood blood
6 chr2:178276800-178294400 Weak transcription Psoas Muscle Psoas
7 chr2:178277400-178291800 Weak transcription Primary T helper cells fromperipheralblood blood
8 chr2:178279600-178294400 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr2:178280400-178296000 Weak transcription Small Intestine intestine
10 chr2:178280800-178294400 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr2:178281200-178292200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr2:178281800-178291800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr2:178283000-178294600 Weak transcription Fetal Kidney kidney
14 chr2:178283800-178294200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr2:178283800-178295200 Weak transcription iPS-18 Cell Line embryonic stem cell
16 chr2:178284000-178294200 Weak transcription NHLF lung
17 chr2:178284400-178291800 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr2:178284400-178292000 Weak transcription iPS-20b Cell Line embryonic stem cell
19 chr2:178284400-178292000 Weak transcription Rectal Smooth Muscle rectum
20 chr2:178284400-178294000 Weak transcription Fetal Thymus thymus
21 chr2:178284600-178294000 Weak transcription HSMM muscle
22 chr2:178284600-178294400 Weak transcription Muscle Satellite Cultured Cells --
23 chr2:178284600-178295800 Weak transcription Colon Smooth Muscle Colon
24 chr2:178284800-178294200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr2:178284800-178294400 Weak transcription Liver Liver
26 chr2:178285000-178294000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr2:178285600-178294200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr2:178285800-178294200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr2:178285800-178294400 Weak transcription Placenta Placenta
30 chr2:178285800-178294800 Weak transcription Esophagus oesophagus
31 chr2:178286200-178294200 Weak transcription Aorta Aorta
32 chr2:178287000-178294200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr2:178287000-178294200 Weak transcription A549 lung
34 chr2:178287000-178296800 Weak transcription Brain Cingulate Gyrus brain
35 chr2:178287200-178292200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr2:178287200-178292400 Weak transcription HepG2 liver
37 chr2:178287200-178295000 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr2:178287200-178300000 Weak transcription Hela-S3 cervix
39 chr2:178287200-178310600 Weak transcription Stomach Mucosa stomach
40 chr2:178287400-178292000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr2:178287400-178292200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr2:178287400-178294000 Weak transcription NH-A brain
43 chr2:178287600-178294200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
44 chr2:178287600-178294800 Weak transcription H1 Cell Line embryonic stem cell
45 chr2:178287600-178294800 Weak transcription K562 blood
46 chr2:178287600-178314200 Weak transcription Gastric stomach
47 chr2:178288000-178297600 Weak transcription HUVEC blood vessel
48 chr2:178288200-178294400 Weak transcription Spleen Spleen
49 chr2:178288400-178291800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr2:178288400-178292000 Weak transcription Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015