The 2.0 version of rSNPBase

Variant report

Variant rs4893945
Chromosome Location chr2:178290199-178290200
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178258800-178294200 Weak transcription Thymus Thymus
2 chr2:178263400-178291800 Weak transcription Duodenum Mucosa Duodenum
3 chr2:178264200-178291600 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr2:178270400-178294400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr2:178271800-178291600 Weak transcription Primary T helper cells PMA-I stimulated --
6 chr2:178272800-178295200 Weak transcription Left Ventricle heart
7 chr2:178274600-178291800 Weak transcription Primary B cells from cord blood blood
8 chr2:178276400-178291400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
9 chr2:178276800-178294400 Weak transcription Psoas Muscle Psoas
10 chr2:178277400-178291800 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr2:178279600-178294400 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr2:178280200-178291600 Weak transcription Primary T cells fromperipheralblood blood
13 chr2:178280400-178296000 Weak transcription Small Intestine intestine
14 chr2:178280800-178294400 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr2:178281200-178291600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr2:178281200-178292200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
17 chr2:178281800-178291800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
18 chr2:178283000-178294600 Weak transcription Fetal Kidney kidney
19 chr2:178283800-178294200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr2:178283800-178295200 Weak transcription iPS-18 Cell Line embryonic stem cell
21 chr2:178284000-178294200 Weak transcription NHLF lung
22 chr2:178284200-178291600 Weak transcription Fetal Lung lung
23 chr2:178284400-178291800 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr2:178284400-178292000 Weak transcription iPS-20b Cell Line embryonic stem cell
25 chr2:178284400-178292000 Weak transcription Rectal Smooth Muscle rectum
26 chr2:178284400-178294000 Weak transcription Fetal Thymus thymus
27 chr2:178284600-178294000 Weak transcription HSMM muscle
28 chr2:178284600-178294400 Weak transcription Muscle Satellite Cultured Cells --
29 chr2:178284600-178295800 Weak transcription Colon Smooth Muscle Colon
30 chr2:178284800-178291000 Weak transcription Brain Angular Gyrus brain
31 chr2:178284800-178294200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr2:178284800-178294400 Weak transcription Liver Liver
33 chr2:178285000-178291600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr2:178285000-178294000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr2:178285600-178294200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr2:178285800-178291600 Weak transcription HUES64 Cell Line embryonic stem cell
37 chr2:178285800-178294200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
38 chr2:178285800-178294400 Weak transcription Placenta Placenta
39 chr2:178285800-178294800 Weak transcription Esophagus oesophagus
40 chr2:178286200-178290200 Weak transcription Fetal Muscle Leg muscle
41 chr2:178286200-178294200 Weak transcription Aorta Aorta
42 chr2:178286600-178290200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr2:178287000-178294200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr2:178287000-178294200 Weak transcription A549 lung
45 chr2:178287000-178296800 Weak transcription Brain Cingulate Gyrus brain
46 chr2:178287200-178292200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr2:178287200-178292400 Weak transcription HepG2 liver
48 chr2:178287200-178295000 Weak transcription Sigmoid Colon Sigmoid Colon
49 chr2:178287200-178300000 Weak transcription Hela-S3 cervix
50 chr2:178287200-178310600 Weak transcription Stomach Mucosa stomach

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Last update: Aug 31, 2015