The 2.0 version of rSNPBase

Variant report

Variant rs10165785
Chromosome Location chr2:178293295-178293296
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178258800-178294200 Weak transcription Thymus Thymus
2 chr2:178270400-178294400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr2:178272800-178295200 Weak transcription Left Ventricle heart
4 chr2:178276800-178294400 Weak transcription Psoas Muscle Psoas
5 chr2:178279600-178294400 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr2:178280400-178296000 Weak transcription Small Intestine intestine
7 chr2:178280800-178294400 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr2:178283000-178294600 Weak transcription Fetal Kidney kidney
9 chr2:178283800-178294200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr2:178283800-178295200 Weak transcription iPS-18 Cell Line embryonic stem cell
11 chr2:178284000-178294200 Weak transcription NHLF lung
12 chr2:178284400-178294000 Weak transcription Fetal Thymus thymus
13 chr2:178284600-178294000 Weak transcription HSMM muscle
14 chr2:178284600-178294400 Weak transcription Muscle Satellite Cultured Cells --
15 chr2:178284600-178295800 Weak transcription Colon Smooth Muscle Colon
16 chr2:178284800-178294200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr2:178284800-178294400 Weak transcription Liver Liver
18 chr2:178285000-178294000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr2:178285600-178294200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
20 chr2:178285800-178294200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
21 chr2:178285800-178294400 Weak transcription Placenta Placenta
22 chr2:178285800-178294800 Weak transcription Esophagus oesophagus
23 chr2:178286200-178294200 Weak transcription Aorta Aorta
24 chr2:178287000-178294200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
25 chr2:178287000-178294200 Weak transcription A549 lung
26 chr2:178287000-178296800 Weak transcription Brain Cingulate Gyrus brain
27 chr2:178287200-178295000 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr2:178287200-178300000 Weak transcription Hela-S3 cervix
29 chr2:178287200-178310600 Weak transcription Stomach Mucosa stomach
30 chr2:178287400-178294000 Weak transcription NH-A brain
31 chr2:178287600-178294200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr2:178287600-178294800 Weak transcription H1 Cell Line embryonic stem cell
33 chr2:178287600-178294800 Weak transcription K562 blood
34 chr2:178287600-178314200 Weak transcription Gastric stomach
35 chr2:178288000-178297600 Weak transcription HUVEC blood vessel
36 chr2:178288200-178294400 Weak transcription Spleen Spleen
37 chr2:178288800-178294000 Weak transcription Primary monocytes fromperipheralblood blood
38 chr2:178289000-178294400 Weak transcription Lung lung
39 chr2:178289400-178299400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr2:178291000-178299400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr2:178291600-178299200 ZNF genes & repeats Primary hematopoietic stem cells blood
42 chr2:178291800-178299000 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
43 chr2:178291800-178299200 ZNF genes & repeats Primary B cells from cord blood blood
44 chr2:178292200-178294200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
45 chr2:178292400-178294600 Weak transcription Primary T helper naive cells from peripheral blood blood
46 chr2:178292600-178294000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr2:178292600-178294200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr2:178292600-178294200 Weak transcription Primary B cells from peripheral blood blood
49 chr2:178292600-178294200 Weak transcription Primary T helper cells PMA-I stimulated --
50 chr2:178292600-178294400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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Last update: Aug 31, 2015