The 2.0 version of rSNPBase

Variant report

Variant rs4893941
Chromosome Location chr2:178269531-178269532
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178258400-178272600 Weak transcription Primary T cells fromperipheralblood blood
2 chr2:178258800-178277200 Weak transcription Right Ventricle heart
3 chr2:178258800-178285000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
4 chr2:178258800-178294200 Weak transcription Thymus Thymus
5 chr2:178259800-178271200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr2:178260200-178269600 Weak transcription Brain Anterior Caudate brain
7 chr2:178260200-178270200 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr2:178260200-178272800 Weak transcription Primary B cells from peripheral blood blood
9 chr2:178260200-178280200 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr2:178260400-178272600 Weak transcription Primary B cells from cord blood blood
11 chr2:178260400-178285600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr2:178262000-178269800 Weak transcription Psoas Muscle Psoas
13 chr2:178262800-178271600 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr2:178262800-178272800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
15 chr2:178262800-178279200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr2:178263200-178275400 Weak transcription Brain Substantia Nigra brain
17 chr2:178263400-178291800 Weak transcription Duodenum Mucosa Duodenum
18 chr2:178263600-178269800 Weak transcription Fetal Intestine Small intestine
19 chr2:178264000-178273200 Weak transcription HUES64 Cell Line embryonic stem cell
20 chr2:178264200-178282800 Weak transcription Dnd41 blood
21 chr2:178264200-178291600 Weak transcription Primary T regulatory cells fromperipheralblood blood
22 chr2:178264400-178271600 Weak transcription Primary monocytes fromperipheralblood blood
23 chr2:178264400-178272200 Weak transcription Left Ventricle heart
24 chr2:178264400-178280400 Weak transcription Primary T killer naive cells fromperipheralblood blood
25 chr2:178264600-178269800 Weak transcription Small Intestine intestine
26 chr2:178264600-178270800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
27 chr2:178264800-178269800 Weak transcription Primary T helper naive cells from peripheral blood blood
28 chr2:178265400-178271800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
29 chr2:178265600-178273200 Weak transcription HSMMtube muscle
30 chr2:178265600-178287000 Weak transcription K562 blood
31 chr2:178265800-178269800 Weak transcription Hela-S3 cervix
32 chr2:178265800-178272600 Weak transcription GM12878-XiMat blood
33 chr2:178266000-178269800 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr2:178266000-178280200 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr2:178266600-178269800 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr2:178266600-178269800 Enhancers HUVEC blood vessel
37 chr2:178266800-178273800 Enhancers Primary neutrophils fromperipheralblood blood
38 chr2:178267400-178271600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr2:178267600-178273000 Enhancers HepG2 liver
40 chr2:178267800-178270200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr2:178267800-178270800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr2:178268000-178270200 Enhancers NHEK skin
43 chr2:178268200-178270000 Weak transcription Colon Smooth Muscle Colon
44 chr2:178268200-178270400 Enhancers Primary hematopoietic stem cells blood
45 chr2:178268200-178277000 Weak transcription Fetal Stomach stomach
46 chr2:178268400-178270000 Enhancers Adipose Nuclei Adipose
47 chr2:178268400-178270200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr2:178268400-178270600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
49 chr2:178268400-178271200 Enhancers Pancreatic Islets Pancreatic Islet
50 chr2:178268600-178269600 Weak transcription Brain Inferior Temporal Lobe brain

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015