Variant report

Variant	rs2605615
Chromosome Location	chr11:93233068-93233069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10466368	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11601056	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11604909	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1563445	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2243410	0.83[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2248020	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs2248524	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2248531	0.98[EUR][1000 genomes]
rs2248655	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2263368	1.00[CHB][hapmap]
rs2605611	0.86[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2605614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2605617	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2605620	0.98[EUR][1000 genomes]
rs2605622	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2605623	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2605626	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2605627	0.86[CEU][hapmap];0.88[CHB][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2605628	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2605629	0.86[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2658766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2658768	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2658769	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2658770	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7116173	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv522568	chr11:93231137-93239907	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv516461	chr11:93231476-93240847	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93207000-93239000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:93209000-93235200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:93211000-93253400	Weak transcription	Primary T cells from cord blood	blood
4	chr11:93211600-93243800	Weak transcription	Fetal Thymus	thymus
5	chr11:93212200-93234800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:93214800-93234400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:93218600-93254400	Weak transcription	Hela-S3	cervix
8	chr11:93218800-93238200	Weak transcription	Esophagus	oesophagus
9	chr11:93218800-93245800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:93220800-93235400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr11:93222400-93238000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr11:93222800-93236000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:93223000-93242800	Weak transcription	Adipose Nuclei	Adipose
14	chr11:93225400-93242800	Weak transcription	GM12878-XiMat	blood
15	chr11:93225600-93248800	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:93226000-93235000	Weak transcription	Small Intestine	intestine
17	chr11:93226400-93257400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:93226600-93238000	Weak transcription	Fetal Lung	lung
19	chr11:93226800-93233600	Weak transcription	Stomach Mucosa	stomach
20	chr11:93227000-93234600	Weak transcription	Gastric	stomach
21	chr11:93227000-93243800	Weak transcription	Lung	lung
22	chr11:93227200-93257600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:93227400-93239800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:93227800-93235000	Weak transcription	Pancreas	Pancrea
25	chr11:93228200-93234000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:93228200-93243400	Weak transcription	Right Ventricle	heart
27	chr11:93228200-93248200	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:93228400-93235000	Weak transcription	HepG2	liver
29	chr11:93228400-93237800	Weak transcription	Osteobl	bone
30	chr11:93229800-93235000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr11:93230400-93233200	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr11:93230600-93233400	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr11:93230600-93234200	Enhancers	H1 Cell Line	embryonic stem cell
34	chr11:93230600-93234200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr11:93230800-93233400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr11:93231000-93236600	Weak transcription	Dnd41	blood
37	chr11:93231600-93235200	Strong transcription	Aorta	Aorta
38	chr11:93231800-93233800	Weak transcription	Thymus	Thymus
39	chr11:93232000-93233400	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr11:93232200-93234000	Weak transcription	Liver	Liver
41	chr11:93232200-93243200	Weak transcription	Spleen	Spleen
42	chr11:93232400-93233600	Weak transcription	HSMM	muscle
43	chr11:93232400-93237400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:93232400-93237800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:93232400-93238800	Weak transcription	Ovary	ovary
46	chr11:93232400-93245200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:93232600-93234000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:93232600-93235800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:93232600-93236200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr11:93232800-93233800	Strong transcription	Monocytes-CD14+_RO01746	blood

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