Variant report

Variant	rs2605628
Chromosome Location	chr11:93261560-93261561
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93259393..93261836-chr11:93266533..93269346,3	K562	blood:
2	chr11:93260994..93262500-chr11:93275483..93277703,2	K562	blood:
3	chr11:93257690..93261836-chr11:93263663..93269980,6	K562	blood:

Variant related genes	Relation type
ENSG00000166002	Chromatin interaction
ENSG00000234106	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10466368	0.83[AMR][1000 genomes]
rs1563445	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2243410	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2248020	0.90[EUR][1000 genomes]
rs2248524	0.90[EUR][1000 genomes]
rs2248531	0.90[EUR][1000 genomes]
rs2248655	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2605611	0.84[AMR][1000 genomes]
rs2605614	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2605615	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2605617	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2605620	0.90[EUR][1000 genomes]
rs2605622	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2605623	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2605626	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2605627	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2605629	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2658766	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2658768	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2658769	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2658770	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93248000-93261800	Weak transcription	Fetal Stomach	stomach
2	chr11:93249000-93261600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr11:93251000-93261600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:93251000-93261600	Weak transcription	Aorta	Aorta
5	chr11:93252000-93266800	Enhancers	Fetal Thymus	thymus
6	chr11:93253800-93266200	Weak transcription	Fetal Brain Female	brain
7	chr11:93255000-93263600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:93255000-93274600	Weak transcription	Hela-S3	cervix
9	chr11:93255600-93262200	Weak transcription	Brain Germinal Matrix	brain
10	chr11:93255800-93261600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:93255800-93262000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:93255800-93263000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:93256000-93262200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:93256200-93263800	Enhancers	Primary B cells from peripheral blood	blood
15	chr11:93256200-93266000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr11:93256400-93266600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:93257200-93264800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:93257400-93264000	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr11:93257400-93264800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr11:93257400-93266600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:93257600-93263000	Enhancers	HepG2	liver
22	chr11:93257600-93264000	Enhancers	Right Ventricle	heart
23	chr11:93257600-93264400	Enhancers	Fetal Muscle Leg	muscle
24	chr11:93257800-93261600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr11:93257800-93264200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:93257800-93264200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:93258000-93262400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr11:93258000-93264600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr11:93258200-93262000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr11:93258200-93266400	Enhancers	Primary T cells from cord blood	blood
31	chr11:93258400-93261600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr11:93258400-93261600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:93258400-93262000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:93258400-93262400	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr11:93258400-93274800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:93258600-93262000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr11:93258600-93262000	Weak transcription	Colon Smooth Muscle	Colon
38	chr11:93258600-93262800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr11:93259000-93262200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:93259200-93262200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:93259400-93261600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:93259400-93261600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr11:93259400-93262000	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr11:93259400-93262200	Weak transcription	NH-A	brain
45	chr11:93259400-93263200	Weak transcription	NHDF-Ad	bronchial
46	chr11:93259600-93261600	Weak transcription	Osteobl	bone
47	chr11:93259600-93262400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:93259800-93261800	Weak transcription	Primary B cells from cord blood	blood
49	chr11:93259800-93262200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr11:93259800-93264000	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links