Variant report

Variant	rs2613927
Chromosome Location	chr3:112833538-112833539
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112831326..112834195-chr3:112837438..112839554,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11920674	0.89[EUR][1000 genomes]
rs1381062	0.81[AFR][1000 genomes]
rs1461105	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1461106	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1563932	0.81[AFR][1000 genomes]
rs17239090	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17317561	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17317638	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795164	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1797613	0.85[AFR][1000 genomes]
rs1797618	0.88[AFR][1000 genomes]
rs2045689	0.85[AFR][1000 genomes]
rs2399468	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2613918	0.85[AFR][1000 genomes]
rs2613924	0.81[AFR][1000 genomes]
rs2613930	0.81[AFR][1000 genomes]
rs2613953	0.88[AFR][1000 genomes]
rs2613955	0.81[AFR][1000 genomes]
rs2613965	0.88[AFR][1000 genomes]
rs2613966	0.88[AFR][1000 genomes]
rs2613969	0.80[YRI][hapmap]
rs2700195	0.80[YRI][hapmap]
rs2700196	0.86[YRI][hapmap]
rs2700211	0.81[AFR][1000 genomes]
rs2700213	0.81[AFR][1000 genomes]
rs2926810	0.81[AFR][1000 genomes]
rs2951457	0.81[AFR][1000 genomes]
rs3101348	0.87[AFR][1000 genomes]
rs62262792	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262793	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262795	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262796	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262798	0.89[EUR][1000 genomes]
rs62262799	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262832	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262833	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262834	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262835	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262836	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262837	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623507	0.88[AFR][1000 genomes]
rs7630531	1.00[CHB][hapmap]
rs878459	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877345	chr3:112826253-112848851	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv522974	chr3:112832063-112836389	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112828200-112836200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:112830000-112835200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:112830200-112835800	Weak transcription	Fetal Stomach	stomach
4	chr3:112830800-112836200	Weak transcription	NHEK	skin
5	chr3:112831200-112836000	Weak transcription	Hela-S3	cervix
6	chr3:112833400-112836200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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