Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11920674	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1461105	0.89[EUR][1000 genomes]
rs1461106	0.89[EUR][1000 genomes]
rs17239090	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17317561	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17317638	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795164	0.89[EUR][1000 genomes]
rs2399468	0.80[EUR][1000 genomes]
rs2613927	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262791	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62262792	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262793	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262795	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262798	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62262799	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262832	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262833	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262834	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262835	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262836	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262837	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878459	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877345	chr3:112826253-112848851	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112808800-112832400	Weak transcription	Primary T cells from cord blood	blood
2	chr3:112826000-112832200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:112828200-112836200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:112829200-112831200	Enhancers	Hela-S3	cervix
5	chr3:112830000-112830800	Enhancers	NHEK	skin
6	chr3:112830000-112835200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:112830200-112835800	Weak transcription	Fetal Stomach	stomach

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