Variant report

Variant	rs62262791
Chromosome Location	chr3:112822096-112822097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112809878..112813820-chr3:112820495..112822351,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238593	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs62262792	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62262793	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62262795	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62262796	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62262799	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62262832	0.92[AMR][1000 genomes]
rs62262833	0.92[AMR][1000 genomes]
rs62262834	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62262835	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62262836	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62262837	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112784800-112824000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:112808800-112832400	Weak transcription	Primary T cells from cord blood	blood
3	chr3:112815400-112822400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:112815600-112822400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:112817600-112824000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:112818000-112822400	Weak transcription	A549	lung
7	chr3:112819000-112822200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:112819400-112830400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:112821200-112823000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:112821200-112825800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr3:112821600-112822200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:112821600-112823600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:112821600-112825800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr3:112821800-112822800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:112821800-112823400	Enhancers	HepG2	liver
16	chr3:112821800-112823400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr3:112821800-112824600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:112821800-112825200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr3:112821800-112825600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr3:112822000-112822200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:112822000-112822800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:112822000-112823400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:112822000-112823800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr3:112822000-112824600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:112822000-112826400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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