Variant report

Variant	rs2615299
Chromosome Location	chr15:44492937-44492938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44484355..44486935-chr15:44492288..44495192,2	MCF-7	breast:
2	chr15:44486877..44488833-chr15:44490905..44493302,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171877	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10459588	1.00[CEU][hapmap]
rs10518994	1.00[CEU][hapmap]
rs10851416	1.00[CEU][hapmap]
rs11070419	1.00[CEU][hapmap]
rs1115870	1.00[CEU][hapmap]
rs1160066	1.00[CEU][hapmap]
rs11857696	1.00[CEU][hapmap]
rs12324261	1.00[CEU][hapmap]
rs12437804	1.00[CEU][hapmap]
rs12591537	1.00[CEU][hapmap]
rs12900237	1.00[CEU][hapmap]
rs12900880	1.00[CEU][hapmap]
rs12910886	0.86[YRI][hapmap]
rs1426657	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1426658	1.00[CEU][hapmap]
rs1808509	1.00[CEU][hapmap]
rs1820482	1.00[CEU][hapmap]
rs1820484	0.88[EUR][1000 genomes]
rs1820485	0.88[EUR][1000 genomes]
rs1834641	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2015277	1.00[CEU][hapmap]
rs2042738	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2042739	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2042741	1.00[CEU][hapmap]
rs2114416	0.88[EUR][1000 genomes]
rs2114421	1.00[CEU][hapmap]
rs2114422	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2162365	0.88[EUR][1000 genomes]
rs2162366	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2217108	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2256928	0.83[YRI][hapmap]
rs2412854	1.00[CEU][hapmap]
rs2447333	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs2447334	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs2463448	0.81[AFR][1000 genomes]
rs2464692	0.81[AFR][1000 genomes]
rs2555366	0.84[EUR][1000 genomes]
rs2555368	0.88[EUR][1000 genomes]
rs2555375	1.00[CEU][hapmap]
rs2555376	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2555380	1.00[CEU][hapmap]
rs2555382	0.88[EUR][1000 genomes]
rs2555384	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2555387	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2555389	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2615269	0.88[EUR][1000 genomes]
rs2615277	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2615278	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2615280	0.88[EUR][1000 genomes]
rs2615281	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2615285	1.00[CEU][hapmap]
rs2615286	0.88[EUR][1000 genomes]
rs2615287	1.00[CEU][hapmap]
rs2615288	1.00[CEU][hapmap]
rs2615293	1.00[CEU][hapmap]
rs2615294	1.00[CEU][hapmap]
rs2615295	1.00[CEU][hapmap]
rs2615297	1.00[CEU][hapmap]
rs2615300	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2615303	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2623019	1.00[CEU][hapmap]
rs2663990	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2696072	0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs2696073	0.81[AFR][1000 genomes]
rs2696074	0.83[YRI][hapmap]
rs2696075	0.81[AFR][1000 genomes]
rs2696076	0.90[AFR][1000 genomes]
rs2696077	0.97[AFR][1000 genomes]
rs2696078	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2696094	1.00[CEU][hapmap]
rs2696098	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2706461	0.81[AFR][1000 genomes]
rs2706465	0.92[AFR][1000 genomes]
rs2706472	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2706473	1.00[CEU][hapmap]
rs2706477	0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs2706478	0.81[YRI][hapmap]
rs2706481	1.00[CEU][hapmap]
rs2706486	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2706487	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2706488	1.00[CEU][hapmap]
rs2706490	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2706491	0.82[EUR][1000 genomes]
rs2706492	0.88[EUR][1000 genomes]
rs2706495	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2733203	1.00[CEU][hapmap]
rs2733204	1.00[CEU][hapmap]
rs2733208	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2733209	1.00[CEU][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2733213	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2733221	1.00[CEU][hapmap]
rs2733226	1.00[CEU][hapmap]
rs2733234	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2899103	1.00[CEU][hapmap]
rs2957581	1.00[CEU][hapmap]
rs4923976	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs4924734	1.00[CEU][hapmap]
rs4924737	1.00[CEU][hapmap]
rs6493093	1.00[CEU][hapmap]
rs6493094	1.00[CEU][hapmap]
rs7166715	1.00[CEU][hapmap]
rs7174819	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8035212	1.00[CEU][hapmap]
rs8036541	1.00[CEU][hapmap]
rs8038096	1.00[CEU][hapmap]
rs8041487	1.00[CEU][hapmap]
rs8042697	0.88[EUR][1000 genomes]
rs890465	1.00[CEU][hapmap]
rs958485	1.00[CEU][hapmap]
rs9920249	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	esv3351630	chr15:44334624-44547841	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv904173	chr15:44391572-44522214	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv904174	chr15:44391572-44538660	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv569298	chr15:44401266-44513090	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv904175	chr15:44403988-44538660	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv904176	chr15:44403988-44579854	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	esv1843598	chr15:44417606-44526813	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
14	esv2754388	chr15:44479709-44592847	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	nsv1044686	chr15:44489534-44697482	Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
16	nsv1043822	chr15:44491220-44686957	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44491200-44493000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr15:44492000-44493600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:44492600-44493000	Enhancers	Brain Hippocampus Middle	brain
4	chr15:44492600-44493400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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