Variant report

Variant	rs2615303
Chromosome Location	chr15:44485923-44485924
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1426657	0.86[EUR][1000 genomes]
rs1820484	0.86[EUR][1000 genomes]
rs1820485	0.86[EUR][1000 genomes]
rs1834641	0.88[EUR][1000 genomes]
rs2042738	0.86[EUR][1000 genomes]
rs2042739	0.86[EUR][1000 genomes]
rs2114416	0.86[EUR][1000 genomes]
rs2114422	0.86[EUR][1000 genomes]
rs2162365	0.86[EUR][1000 genomes]
rs2162366	0.86[EUR][1000 genomes]
rs2217108	0.86[EUR][1000 genomes]
rs2256928	0.81[AFR][1000 genomes]
rs2447333	0.97[AFR][1000 genomes]
rs2447334	0.84[AFR][1000 genomes]
rs2463448	0.84[AFR][1000 genomes]
rs2464692	0.84[AFR][1000 genomes]
rs2555366	0.82[EUR][1000 genomes]
rs2555368	0.86[EUR][1000 genomes]
rs2555376	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2555382	0.86[EUR][1000 genomes]
rs2555384	0.86[EUR][1000 genomes]
rs2555387	0.98[EUR][1000 genomes]
rs2555389	0.86[EUR][1000 genomes]
rs2615269	0.86[EUR][1000 genomes]
rs2615277	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2615278	0.98[EUR][1000 genomes]
rs2615280	0.86[EUR][1000 genomes]
rs2615281	1.00[EUR][1000 genomes]
rs2615286	0.86[EUR][1000 genomes]
rs2615299	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2615300	0.95[AFR][1000 genomes]
rs2663990	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2696072	0.84[AFR][1000 genomes]
rs2696073	0.84[AFR][1000 genomes]
rs2696074	0.82[AFR][1000 genomes]
rs2696075	0.84[AFR][1000 genomes]
rs2696076	0.92[AFR][1000 genomes]
rs2696077	0.95[AFR][1000 genomes]
rs2696078	0.92[AFR][1000 genomes]
rs2696098	1.00[EUR][1000 genomes]
rs2706461	0.84[AFR][1000 genomes]
rs2706465	0.93[AFR][1000 genomes]
rs2706472	0.84[EUR][1000 genomes]
rs2706477	0.84[AFR][1000 genomes]
rs2706478	0.82[AFR][1000 genomes]
rs2706486	0.86[EUR][1000 genomes]
rs2706487	0.81[EUR][1000 genomes]
rs2706490	0.86[EUR][1000 genomes]
rs2706492	0.86[EUR][1000 genomes]
rs2706495	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2733208	0.86[EUR][1000 genomes]
rs2733209	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2733213	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2733234	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7174819	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8042697	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	esv3351630	chr15:44334624-44547841	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv904173	chr15:44391572-44522214	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv904174	chr15:44391572-44538660	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv569298	chr15:44401266-44513090	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv904175	chr15:44403988-44538660	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv904176	chr15:44403988-44579854	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	esv1843598	chr15:44417606-44526813	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
14	esv2754388	chr15:44479709-44592847	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44484200-44486600	Flanking Active TSS	HUVEC	blood vessel
2	chr15:44484200-44487800	Active TSS	Brain Anterior Caudate	brain
3	chr15:44484200-44488000	Active TSS	Brain Hippocampus Middle	brain
4	chr15:44484200-44488000	Active TSS	Brain Substantia Nigra	brain
5	chr15:44484200-44488200	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr15:44484200-44488200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:44484400-44487800	Active TSS	Brain Angular Gyrus	brain
8	chr15:44484400-44487800	Active TSS	Brain Cingulate Gyrus	brain
9	chr15:44484600-44487600	Active TSS	HMEC	breast
10	chr15:44484600-44488200	Active TSS	Fetal Brain Female	brain
11	chr15:44484600-44488200	Active TSS	NH-A	brain
12	chr15:44484800-44486000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:44484800-44486200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr15:44484800-44486800	Active TSS	Fetal Brain Male	brain
15	chr15:44485000-44486000	Active TSS	Brain Germinal Matrix	brain
16	chr15:44485200-44486800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:44485400-44486000	Bivalent/Poised TSS	Osteobl	bone
18	chr15:44485400-44486200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr15:44485400-44486200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:44485400-44486200	Flanking Active TSS	NHEK	skin
21	chr15:44485400-44487000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
22	chr15:44485600-44486000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
23	chr15:44485600-44486000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
24	chr15:44485600-44486000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr15:44485600-44486000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:44485600-44486000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
27	chr15:44485600-44486000	Flanking Active TSS	A549	lung
28	chr15:44485600-44486200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
29	chr15:44485600-44486200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:44485600-44486200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr15:44485600-44486600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr15:44485600-44486600	Bivalent/Poised TSS	NHDF-Ad	bronchial
33	chr15:44485600-44487200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
34	chr15:44485600-44488000	Active TSS	Right Atrium	heart
35	chr15:44485600-44488200	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr15:44485800-44486000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
37	chr15:44485800-44486000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:44485800-44486000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
39	chr15:44485800-44486000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:44485800-44486000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
41	chr15:44485800-44486000	Active TSS	Muscle Satellite Cultured Cells	--
42	chr15:44485800-44486000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:44485800-44486000	Active TSS	Colonic Mucosa	Colon
44	chr15:44485800-44486000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
45	chr15:44485800-44486000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
46	chr15:44485800-44486000	Bivalent Enhancer	Fetal Intestine Large	intestine
47	chr15:44485800-44486000	Bivalent/Poised TSS	Left Ventricle	heart
48	chr15:44485800-44486000	Bivalent Enhancer	Lung	lung
49	chr15:44485800-44486000	Bivalent Enhancer	Psoas Muscle	Psoas
50	chr15:44485800-44486000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links