Variant report

Variant	rs2615462
Chromosome Location	chr14:84531242-84531243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17657042	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17730419	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779566	0.84[ASN][1000 genomes]
rs2787450	0.86[AFR][1000 genomes]
rs2787452	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4369583	0.86[ASN][1000 genomes]
rs4551972	0.86[ASN][1000 genomes]
rs55645564	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55912304	0.86[ASN][1000 genomes]
rs72701082	0.86[ASN][1000 genomes]
rs72701083	0.90[ASN][1000 genomes]
rs72701092	0.86[ASN][1000 genomes]
rs7494031	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1382	chr14:84487547-84532237	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2615462	GTF2A1	cis	cerebellum	SCAN
rs2615462	FLRT2	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84530400-84532600	Enhancers	Fetal Brain Male	brain
2	chr14:84530800-84531400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr14:84530800-84531400	Enhancers	Adipose Nuclei	Adipose
4	chr14:84530800-84531400	Enhancers	HUVEC	blood vessel
5	chr14:84530800-84531800	Enhancers	Fetal Brain Female	brain
6	chr14:84531000-84531400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:84531000-84531400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:84531000-84531400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:84531000-84531600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr14:84531200-84531600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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