Variant report

Variant	rs4551972
Chromosome Location	chr14:84561993-84561994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11627572	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11628862	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17119553	0.82[AFR][1000 genomes]
rs17624404	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17657042	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17697962	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17730419	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1779566	0.98[ASN][1000 genomes]
rs2615462	0.86[ASN][1000 genomes]
rs2787452	0.86[ASN][1000 genomes]
rs4369583	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55645564	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs55912304	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72701082	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72701083	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72701092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72703208	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72703211	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7494031	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4551972	FLRT2	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84550600-84563800	Weak transcription	Esophagus	oesophagus
2	chr14:84558600-84566400	Weak transcription	Fetal Stomach	stomach
3	chr14:84561400-84562400	Enhancers	Adipose Nuclei	Adipose
4	chr14:84561600-84562800	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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