Variant report

Variant	rs2615526
Chromosome Location	chr6:114185735-114185736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114184976..114187157-chr6:114188705..114190881,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10214653	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1768030	1.00[EUR][1000 genomes]
rs2615525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45457891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743948	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320473	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9481403	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488272	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488273	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488274	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885967	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114181000-114200200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:114181200-114193200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:114181800-114186000	Weak transcription	Lung	lung
4	chr6:114181800-114193200	Weak transcription	Liver	Liver
5	chr6:114181800-114194200	Weak transcription	Pancreas	Pancrea
6	chr6:114182000-114187400	Weak transcription	Colonic Mucosa	Colon
7	chr6:114182200-114192600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:114182200-114194200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:114182200-114194200	Weak transcription	Ovary	ovary
10	chr6:114182400-114193000	Weak transcription	Fetal Intestine Small	intestine
11	chr6:114182400-114193200	Weak transcription	Fetal Intestine Large	intestine
12	chr6:114182600-114193000	Weak transcription	HepG2	liver
13	chr6:114182800-114193000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:114183000-114185800	Weak transcription	Fetal Stomach	stomach
15	chr6:114183200-114196200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:114183600-114196400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:114183800-114186200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:114183800-114193400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:114183800-114196200	Weak transcription	NHLF	lung
20	chr6:114183800-114200200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:114183800-114200400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:114184000-114186000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr6:114184000-114186000	Weak transcription	Placenta	Placenta
24	chr6:114184000-114186600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:114184000-114191000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr6:114184000-114193200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:114184000-114193200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:114184000-114194200	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr6:114184000-114200200	Weak transcription	Fetal Kidney	kidney
30	chr6:114184200-114187200	Weak transcription	Fetal Brain Male	brain
31	chr6:114184200-114193000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:114184200-114193200	Weak transcription	Primary B cells from cord blood	blood
33	chr6:114184200-114194200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr6:114184200-114194200	Weak transcription	HUVEC	blood vessel
35	chr6:114184200-114195800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:114184200-114196000	Weak transcription	HSMM	muscle
37	chr6:114184200-114196400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:114184400-114187800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:114184400-114188000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:114184400-114188400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:114184400-114191600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:114184400-114192400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:114184400-114194200	Weak transcription	Fetal Lung	lung
44	chr6:114184400-114194200	Weak transcription	Fetal Thymus	thymus
45	chr6:114184400-114196200	Weak transcription	NH-A	brain
46	chr6:114184600-114186800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:114184600-114193000	Weak transcription	NHDF-Ad	bronchial
48	chr6:114184800-114193200	Weak transcription	Osteobl	bone
49	chr6:114185400-114188200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:114185400-114189600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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