Variant report

Variant	rs9320473
Chromosome Location	chr6:114193607-114193608
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114178176..114180807-chr6:114192347..114194542,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10214653	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1768030	1.00[EUR][1000 genomes]
rs2615525	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615526	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45457891	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743948	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750465	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758918	0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9481403	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488272	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488273	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488274	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9488277	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885967	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114181000-114200200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:114181800-114194200	Weak transcription	Pancreas	Pancrea
3	chr6:114182200-114194200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:114182200-114194200	Weak transcription	Ovary	ovary
5	chr6:114183200-114196200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:114183600-114196400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:114183800-114196200	Weak transcription	NHLF	lung
8	chr6:114183800-114200200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:114183800-114200400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:114184000-114194200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:114184000-114200200	Weak transcription	Fetal Kidney	kidney
12	chr6:114184200-114194200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:114184200-114194200	Weak transcription	HUVEC	blood vessel
14	chr6:114184200-114195800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:114184200-114196000	Weak transcription	HSMM	muscle
16	chr6:114184200-114196400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:114184400-114194200	Weak transcription	Fetal Lung	lung
18	chr6:114184400-114194200	Weak transcription	Fetal Thymus	thymus
19	chr6:114184400-114196200	Weak transcription	NH-A	brain
20	chr6:114191800-114194200	Active TSS	GM12878-XiMat	blood
21	chr6:114192000-114195800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:114192000-114196200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:114192600-114195000	Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr6:114193000-114194000	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr6:114193000-114194000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:114193200-114194000	Enhancers	Liver	Liver
27	chr6:114193200-114194200	Enhancers	Primary B cells from cord blood	blood
28	chr6:114193200-114195000	Active TSS	Duodenum Mucosa	Duodenum
29	chr6:114193200-114195000	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr6:114193200-114195000	Active TSS	Fetal Intestine Large	intestine
31	chr6:114193200-114195000	Active TSS	Fetal Intestine Small	intestine
32	chr6:114193200-114195200	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr6:114193400-114193800	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr6:114193400-114194000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:114193400-114194200	Active TSS	Primary hematopoietic stem cells	blood
36	chr6:114193400-114194600	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr6:114193400-114195000	Active TSS	Rectal Mucosa Donor 31	rectum
38	chr6:114193400-114195000	Active TSS	Osteobl	bone
39	chr6:114193400-114196200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:114193600-114194000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:114193600-114194000	Weak transcription	A549	lung
42	chr6:114193600-114194000	Active TSS	Dnd41	blood
43	chr6:114193600-114194200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:114193600-114194600	Weak transcription	NHDF-Ad	bronchial
45	chr6:114193600-114194800	Active TSS	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links